Experiment: Mucin from porcine stomach type II 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS17380 and HMPREF1058_RS17375 are separated by 198 nucleotides HMPREF1058_RS17375 and HMPREF1058_RS17370 are separated by 277 nucleotides HMPREF1058_RS17370 and HMPREF1058_RS17365 are separated by 67 nucleotides HMPREF1058_RS17365 and HMPREF1058_RS17360 are separated by 527 nucleotides
HMPREF1058_RS17380: HMPREF1058_RS17380 - DUF3987 domain-containing protein, at 456,609 to 458,987
_RS17380
HMPREF1058_RS17375: HMPREF1058_RS17375 - hypothetical protein, at 459,186 to 459,383
_RS17375
HMPREF1058_RS17370: HMPREF1058_RS17370 - UpxY family transcription antiterminator, at 459,661 to 460,161
_RS17370
HMPREF1058_RS17365: HMPREF1058_RS17365 - nucleotidyltransferase domain-containing protein, at 460,229 to 460,519
_RS17365
HMPREF1058_RS17360: HMPREF1058_RS17360 - hypothetical protein, at 461,047 to 462,564
_RS17360
Position (kb) 459
460
461 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 458.959 kb on + strand at 458.959 kb on + strand at 459.047 kb on + strand at 459.466 kb on - strand at 459.682 kb on + strand at 459.683 kb on - strand at 459.756 kb on - strand, within HMPREF1058_RS17370 at 459.836 kb on + strand, within HMPREF1058_RS17370 at 459.837 kb on - strand, within HMPREF1058_RS17370 at 459.887 kb on - strand, within HMPREF1058_RS17370 at 460.095 kb on - strand, within HMPREF1058_RS17370 at 460.160 kb on - strand at 460.160 kb on - strand at 460.270 kb on - strand, within HMPREF1058_RS17365 at 460.303 kb on - strand, within HMPREF1058_RS17365 at 460.303 kb on - strand at 460.390 kb on - strand, within HMPREF1058_RS17365 at 460.483 kb on - strand, within HMPREF1058_RS17365 at 460.542 kb on + strand at 460.542 kb on + strand at 460.633 kb on + strand at 460.640 kb on + strand at 460.670 kb on + strand at 460.670 kb on + strand at 460.671 kb on - strand at 460.742 kb on - strand at 460.748 kb on + strand at 460.748 kb on + strand at 460.749 kb on - strand at 460.752 kb on - strand at 460.814 kb on + strand at 460.814 kb on + strand at 460.814 kb on + strand at 460.831 kb on + strand at 460.831 kb on + strand at 460.904 kb on - strand at 460.941 kb on - strand at 460.994 kb on + strand at 460.994 kb on + strand at 460.999 kb on - strand at 461.002 kb on - strand at 461.102 kb on + strand at 461.102 kb on + strand at 461.107 kb on - strand at 461.116 kb on - strand at 461.127 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mucin from porcine stomach type II 2.5 mg/ml (C) remove 458,959 + -0.1 458,959 + +0.6 459,047 + +0.5 459,466 - -1.7 459,682 + +0.0 459,683 - -1.3 459,756 - HMPREF1058_RS17370 0.19 -0.3 459,836 + HMPREF1058_RS17370 0.35 -0.8 459,837 - HMPREF1058_RS17370 0.35 -0.6 459,887 - HMPREF1058_RS17370 0.45 +0.7 460,095 - HMPREF1058_RS17370 0.87 -0.7 460,160 - -0.1 460,160 - -0.1 460,270 - HMPREF1058_RS17365 0.14 -0.5 460,303 - HMPREF1058_RS17365 0.25 -0.7 460,303 - +0.7 460,390 - HMPREF1058_RS17365 0.55 +0.0 460,483 - HMPREF1058_RS17365 0.87 +0.8 460,542 + +0.2 460,542 + +1.2 460,633 + +0.3 460,640 + -0.4 460,670 + -0.8 460,670 + -0.4 460,671 - +0.2 460,742 - -1.1 460,748 + -1.9 460,748 + -1.6 460,749 - -1.1 460,752 - +2.8 460,814 + -1.7 460,814 + -0.1 460,814 + -0.2 460,831 + +0.6 460,831 + +0.9 460,904 - +0.5 460,941 - -0.2 460,994 + -0.1 460,994 + -0.4 460,999 - +1.5 461,002 - -0.4 461,102 + -0.3 461,102 + +1.1 461,107 - -0.1 461,116 - -0.5 461,127 - -0.1
Or see this region's nucleotide sequence