Experiment: Mucin from porcine stomach type II 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS17180 and HMPREF1058_RS17175 are separated by 158 nucleotides HMPREF1058_RS17175 and HMPREF1058_RS17170 are separated by 187 nucleotides
HMPREF1058_RS17180: HMPREF1058_RS17180 - FAD:protein FMN transferase, at 507,850 to 508,866
_RS17180
HMPREF1058_RS17175: HMPREF1058_RS17175 - MarC family protein, at 509,025 to 509,627
_RS17175
HMPREF1058_RS17170: HMPREF1058_RS17170 - Crp/Fnr family transcriptional regulator, at 509,815 to 510,492
_RS17170
Position (kb) 509
510 Strain fitness (log2 ratio) -2
-1
0
1
2 at 508.882 kb on - strand at 508.980 kb on - strand at 508.980 kb on - strand at 508.983 kb on + strand at 508.984 kb on - strand at 509.001 kb on + strand at 509.002 kb on - strand at 509.024 kb on - strand at 509.072 kb on + strand at 509.088 kb on + strand, within HMPREF1058_RS17175 at 509.226 kb on + strand, within HMPREF1058_RS17175 at 509.236 kb on + strand, within HMPREF1058_RS17175 at 509.445 kb on - strand, within HMPREF1058_RS17175 at 509.472 kb on + strand, within HMPREF1058_RS17175 at 509.543 kb on + strand, within HMPREF1058_RS17175 at 509.549 kb on + strand, within HMPREF1058_RS17175 at 509.561 kb on + strand, within HMPREF1058_RS17175 at 509.562 kb on - strand, within HMPREF1058_RS17175 at 509.627 kb on + strand at 509.655 kb on - strand at 509.655 kb on - strand at 509.657 kb on - strand at 509.682 kb on + strand at 509.683 kb on - strand at 509.745 kb on + strand at 509.773 kb on - strand at 509.781 kb on - strand at 509.791 kb on - strand at 509.824 kb on - strand at 509.830 kb on + strand at 509.831 kb on - strand at 509.835 kb on + strand at 509.903 kb on + strand, within HMPREF1058_RS17170 at 509.904 kb on - strand, within HMPREF1058_RS17170 at 509.924 kb on - strand at 509.984 kb on + strand, within HMPREF1058_RS17170 at 509.996 kb on + strand, within HMPREF1058_RS17170 at 510.028 kb on + strand, within HMPREF1058_RS17170 at 510.035 kb on + strand at 510.065 kb on + strand, within HMPREF1058_RS17170 at 510.100 kb on + strand, within HMPREF1058_RS17170 at 510.102 kb on + strand, within HMPREF1058_RS17170 at 510.102 kb on + strand, within HMPREF1058_RS17170 at 510.124 kb on - strand, within HMPREF1058_RS17170 at 510.124 kb on - strand, within HMPREF1058_RS17170 at 510.124 kb on - strand, within HMPREF1058_RS17170 at 510.137 kb on + strand, within HMPREF1058_RS17170 at 510.138 kb on - strand, within HMPREF1058_RS17170 at 510.138 kb on - strand, within HMPREF1058_RS17170 at 510.155 kb on + strand, within HMPREF1058_RS17170 at 510.155 kb on + strand, within HMPREF1058_RS17170 at 510.156 kb on - strand, within HMPREF1058_RS17170 at 510.156 kb on - strand, within HMPREF1058_RS17170 at 510.198 kb on + strand, within HMPREF1058_RS17170 at 510.207 kb on - strand, within HMPREF1058_RS17170 at 510.219 kb on + strand, within HMPREF1058_RS17170 at 510.222 kb on + strand, within HMPREF1058_RS17170 at 510.222 kb on + strand, within HMPREF1058_RS17170 at 510.263 kb on + strand, within HMPREF1058_RS17170 at 510.263 kb on + strand, within HMPREF1058_RS17170 at 510.264 kb on - strand at 510.428 kb on + strand at 510.499 kb on - strand at 510.523 kb on + strand at 510.524 kb on - strand at 510.563 kb on - strand at 510.567 kb on - strand at 510.570 kb on - strand at 510.572 kb on - strand at 510.587 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mucin from porcine stomach type II 2.5 mg/ml (C) remove 508,882 - +0.7 508,980 - -0.3 508,980 - -0.1 508,983 + +0.2 508,984 - -0.5 509,001 + -0.2 509,002 - +0.6 509,024 - +0.9 509,072 + -2.4 509,088 + HMPREF1058_RS17175 0.10 -0.8 509,226 + HMPREF1058_RS17175 0.33 -0.1 509,236 + HMPREF1058_RS17175 0.35 -1.4 509,445 - HMPREF1058_RS17175 0.70 -1.3 509,472 + HMPREF1058_RS17175 0.74 +0.2 509,543 + HMPREF1058_RS17175 0.86 -0.8 509,549 + HMPREF1058_RS17175 0.87 -0.2 509,561 + HMPREF1058_RS17175 0.89 +0.7 509,562 - HMPREF1058_RS17175 0.89 -1.2 509,627 + -0.4 509,655 - +2.6 509,655 - +0.1 509,657 - -1.3 509,682 + -0.9 509,683 - +1.0 509,745 + +1.5 509,773 - -0.3 509,781 - +0.2 509,791 - +0.1 509,824 - +0.6 509,830 + +0.1 509,831 - +2.6 509,835 + +0.9 509,903 + HMPREF1058_RS17170 0.13 -0.4 509,904 - HMPREF1058_RS17170 0.13 -1.9 509,924 - -0.3 509,984 + HMPREF1058_RS17170 0.25 -1.2 509,996 + HMPREF1058_RS17170 0.27 +0.1 510,028 + HMPREF1058_RS17170 0.31 -0.1 510,035 + +1.6 510,065 + HMPREF1058_RS17170 0.37 +0.7 510,100 + HMPREF1058_RS17170 0.42 -0.3 510,102 + HMPREF1058_RS17170 0.42 -0.8 510,102 + HMPREF1058_RS17170 0.42 +0.1 510,124 - HMPREF1058_RS17170 0.46 -0.2 510,124 - HMPREF1058_RS17170 0.46 +0.8 510,124 - HMPREF1058_RS17170 0.46 +2.1 510,137 + HMPREF1058_RS17170 0.47 +0.4 510,138 - HMPREF1058_RS17170 0.48 +2.1 510,138 - HMPREF1058_RS17170 0.48 -0.1 510,155 + HMPREF1058_RS17170 0.50 +0.1 510,155 + HMPREF1058_RS17170 0.50 +0.2 510,156 - HMPREF1058_RS17170 0.50 -1.5 510,156 - HMPREF1058_RS17170 0.50 +0.8 510,198 + HMPREF1058_RS17170 0.56 +0.4 510,207 - HMPREF1058_RS17170 0.58 +0.5 510,219 + HMPREF1058_RS17170 0.60 +0.1 510,222 + HMPREF1058_RS17170 0.60 -0.1 510,222 + HMPREF1058_RS17170 0.60 -0.3 510,263 + HMPREF1058_RS17170 0.66 -1.1 510,263 + HMPREF1058_RS17170 0.66 +1.3 510,264 - -0.9 510,428 + -0.9 510,499 - -0.1 510,523 + +0.1 510,524 - -2.2 510,563 - -0.5 510,567 - +0.5 510,570 - +1.6 510,572 - +0.9 510,587 + -0.5
Or see this region's nucleotide sequence