Experiment: Mucin from porcine stomach type II 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS17065 and HMPREF1058_RS17060 are separated by 6 nucleotides HMPREF1058_RS17060 and HMPREF1058_RS17055 are separated by 4 nucleotides
HMPREF1058_RS17065: HMPREF1058_RS17065 - sugar MFS transporter, at 527,042 to 528,241
_RS17065
HMPREF1058_RS17060: HMPREF1058_RS17060 - HAD family hydrolase, at 528,248 to 528,970
_RS17060
HMPREF1058_RS17055: HMPREF1058_RS17055 - flippase-like domain-containing protein, at 528,975 to 529,976
_RS17055
Position (kb) 528
529 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 527.281 kb on - strand, within HMPREF1058_RS17065 at 527.281 kb on - strand, within HMPREF1058_RS17065 at 527.316 kb on - strand, within HMPREF1058_RS17065 at 527.366 kb on + strand, within HMPREF1058_RS17065 at 527.502 kb on + strand, within HMPREF1058_RS17065 at 527.502 kb on + strand, within HMPREF1058_RS17065 at 527.503 kb on - strand, within HMPREF1058_RS17065 at 527.509 kb on + strand, within HMPREF1058_RS17065 at 527.518 kb on + strand, within HMPREF1058_RS17065 at 527.525 kb on - strand, within HMPREF1058_RS17065 at 527.545 kb on - strand, within HMPREF1058_RS17065 at 527.571 kb on - strand, within HMPREF1058_RS17065 at 527.576 kb on + strand, within HMPREF1058_RS17065 at 527.684 kb on + strand, within HMPREF1058_RS17065 at 527.705 kb on - strand, within HMPREF1058_RS17065 at 527.705 kb on - strand, within HMPREF1058_RS17065 at 527.705 kb on - strand, within HMPREF1058_RS17065 at 527.705 kb on - strand, within HMPREF1058_RS17065 at 527.706 kb on + strand, within HMPREF1058_RS17065 at 527.706 kb on + strand, within HMPREF1058_RS17065 at 527.706 kb on + strand, within HMPREF1058_RS17065 at 527.706 kb on + strand, within HMPREF1058_RS17065 at 527.707 kb on - strand, within HMPREF1058_RS17065 at 527.707 kb on - strand, within HMPREF1058_RS17065 at 527.720 kb on - strand, within HMPREF1058_RS17065 at 527.783 kb on + strand, within HMPREF1058_RS17065 at 527.851 kb on + strand, within HMPREF1058_RS17065 at 527.851 kb on + strand, within HMPREF1058_RS17065 at 527.852 kb on - strand, within HMPREF1058_RS17065 at 528.013 kb on - strand, within HMPREF1058_RS17065 at 528.013 kb on - strand, within HMPREF1058_RS17065 at 528.047 kb on + strand, within HMPREF1058_RS17065 at 528.048 kb on - strand, within HMPREF1058_RS17065 at 528.055 kb on - strand, within HMPREF1058_RS17065 at 528.104 kb on - strand, within HMPREF1058_RS17065 at 528.135 kb on - strand at 528.145 kb on + strand at 528.185 kb on + strand at 528.200 kb on + strand at 528.201 kb on - strand at 528.287 kb on + strand at 528.359 kb on + strand, within HMPREF1058_RS17060 at 528.360 kb on - strand, within HMPREF1058_RS17060 at 528.454 kb on - strand, within HMPREF1058_RS17060 at 528.454 kb on - strand, within HMPREF1058_RS17060 at 528.454 kb on - strand, within HMPREF1058_RS17060 at 528.548 kb on + strand, within HMPREF1058_RS17060 at 528.549 kb on - strand, within HMPREF1058_RS17060 at 528.583 kb on + strand, within HMPREF1058_RS17060 at 528.585 kb on + strand, within HMPREF1058_RS17060 at 528.630 kb on - strand, within HMPREF1058_RS17060 at 528.630 kb on - strand, within HMPREF1058_RS17060 at 528.630 kb on - strand, within HMPREF1058_RS17060 at 528.630 kb on - strand, within HMPREF1058_RS17060 at 528.632 kb on - strand, within HMPREF1058_RS17060 at 528.642 kb on + strand, within HMPREF1058_RS17060 at 528.773 kb on - strand, within HMPREF1058_RS17060 at 528.799 kb on + strand, within HMPREF1058_RS17060 at 528.825 kb on + strand, within HMPREF1058_RS17060 at 528.826 kb on - strand, within HMPREF1058_RS17060 at 528.873 kb on + strand, within HMPREF1058_RS17060 at 528.874 kb on - strand, within HMPREF1058_RS17060 at 528.877 kb on + strand, within HMPREF1058_RS17060 at 528.877 kb on + strand, within HMPREF1058_RS17060 at 528.878 kb on - strand, within HMPREF1058_RS17060 at 528.917 kb on + strand at 528.918 kb on - strand at 528.931 kb on - strand at 528.939 kb on - strand at 528.964 kb on + strand at 528.977 kb on - strand at 528.981 kb on - strand at 528.992 kb on + strand at 529.027 kb on - strand at 529.194 kb on + strand, within HMPREF1058_RS17055 at 529.263 kb on + strand, within HMPREF1058_RS17055 at 529.263 kb on + strand, within HMPREF1058_RS17055 at 529.313 kb on + strand, within HMPREF1058_RS17055 at 529.314 kb on - strand at 529.322 kb on + strand, within HMPREF1058_RS17055 at 529.483 kb on - strand, within HMPREF1058_RS17055 at 529.514 kb on + strand, within HMPREF1058_RS17055 at 529.514 kb on + strand, within HMPREF1058_RS17055 at 529.515 kb on - strand, within HMPREF1058_RS17055 at 529.515 kb on - strand, within HMPREF1058_RS17055 at 529.515 kb on - strand, within HMPREF1058_RS17055 at 529.530 kb on - strand, within HMPREF1058_RS17055 at 529.552 kb on + strand, within HMPREF1058_RS17055 at 529.610 kb on - strand, within HMPREF1058_RS17055 at 529.648 kb on + strand, within HMPREF1058_RS17055 at 529.761 kb on - strand, within HMPREF1058_RS17055 at 529.790 kb on + strand, within HMPREF1058_RS17055 at 529.793 kb on + strand, within HMPREF1058_RS17055 at 529.794 kb on - strand, within HMPREF1058_RS17055 at 529.796 kb on - strand, within HMPREF1058_RS17055 at 529.823 kb on + strand at 529.824 kb on - strand, within HMPREF1058_RS17055 at 529.824 kb on - strand, within HMPREF1058_RS17055 at 529.877 kb on + strand at 529.924 kb on - strand at 529.955 kb on + strand at 529.956 kb on - strand at 529.964 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mucin from porcine stomach type II 2.5 mg/ml (C) remove 527,281 - HMPREF1058_RS17065 0.20 +0.1 527,281 - HMPREF1058_RS17065 0.20 +0.3 527,316 - HMPREF1058_RS17065 0.23 +0.1 527,366 + HMPREF1058_RS17065 0.27 -0.3 527,502 + HMPREF1058_RS17065 0.38 -0.7 527,502 + HMPREF1058_RS17065 0.38 -0.2 527,503 - HMPREF1058_RS17065 0.38 +3.1 527,509 + HMPREF1058_RS17065 0.39 +0.2 527,518 + HMPREF1058_RS17065 0.40 -1.2 527,525 - HMPREF1058_RS17065 0.40 +1.4 527,545 - HMPREF1058_RS17065 0.42 +0.1 527,571 - HMPREF1058_RS17065 0.44 -0.5 527,576 + HMPREF1058_RS17065 0.45 -0.5 527,684 + HMPREF1058_RS17065 0.54 -0.0 527,705 - HMPREF1058_RS17065 0.55 -1.4 527,705 - HMPREF1058_RS17065 0.55 -0.3 527,705 - HMPREF1058_RS17065 0.55 +0.7 527,705 - HMPREF1058_RS17065 0.55 -0.5 527,706 + HMPREF1058_RS17065 0.55 +0.4 527,706 + HMPREF1058_RS17065 0.55 +2.2 527,706 + HMPREF1058_RS17065 0.55 -0.6 527,706 + HMPREF1058_RS17065 0.55 -0.8 527,707 - HMPREF1058_RS17065 0.55 +0.7 527,707 - HMPREF1058_RS17065 0.55 -0.1 527,720 - HMPREF1058_RS17065 0.56 +0.1 527,783 + HMPREF1058_RS17065 0.62 -1.1 527,851 + HMPREF1058_RS17065 0.67 +0.1 527,851 + HMPREF1058_RS17065 0.67 -0.3 527,852 - HMPREF1058_RS17065 0.68 +0.8 528,013 - HMPREF1058_RS17065 0.81 +0.2 528,013 - HMPREF1058_RS17065 0.81 -0.2 528,047 + HMPREF1058_RS17065 0.84 -2.2 528,048 - HMPREF1058_RS17065 0.84 -0.4 528,055 - HMPREF1058_RS17065 0.84 +1.2 528,104 - HMPREF1058_RS17065 0.89 -0.1 528,135 - +0.1 528,145 + -0.0 528,185 + -0.5 528,200 + -1.3 528,201 - -0.0 528,287 + -1.4 528,359 + HMPREF1058_RS17060 0.15 +0.1 528,360 - HMPREF1058_RS17060 0.15 -1.3 528,454 - HMPREF1058_RS17060 0.28 -0.7 528,454 - HMPREF1058_RS17060 0.28 -0.3 528,454 - HMPREF1058_RS17060 0.28 -0.8 528,548 + HMPREF1058_RS17060 0.41 +1.0 528,549 - HMPREF1058_RS17060 0.42 -2.0 528,583 + HMPREF1058_RS17060 0.46 -0.3 528,585 + HMPREF1058_RS17060 0.47 -0.6 528,630 - HMPREF1058_RS17060 0.53 +0.3 528,630 - HMPREF1058_RS17060 0.53 +1.0 528,630 - HMPREF1058_RS17060 0.53 -0.5 528,630 - HMPREF1058_RS17060 0.53 +0.5 528,632 - HMPREF1058_RS17060 0.53 -1.1 528,642 + HMPREF1058_RS17060 0.54 -0.0 528,773 - HMPREF1058_RS17060 0.73 -0.8 528,799 + HMPREF1058_RS17060 0.76 -0.7 528,825 + HMPREF1058_RS17060 0.80 -0.8 528,826 - HMPREF1058_RS17060 0.80 +1.3 528,873 + HMPREF1058_RS17060 0.86 +0.6 528,874 - HMPREF1058_RS17060 0.87 -1.1 528,877 + HMPREF1058_RS17060 0.87 +0.6 528,877 + HMPREF1058_RS17060 0.87 -1.1 528,878 - HMPREF1058_RS17060 0.87 -0.1 528,917 + +0.0 528,918 - +1.2 528,931 - +1.4 528,939 - -0.4 528,964 + +0.0 528,977 - +0.1 528,981 - -0.5 528,992 + -1.4 529,027 - +0.3 529,194 + HMPREF1058_RS17055 0.22 -1.4 529,263 + HMPREF1058_RS17055 0.29 -0.8 529,263 + HMPREF1058_RS17055 0.29 +1.0 529,313 + HMPREF1058_RS17055 0.34 +1.6 529,314 - +1.0 529,322 + HMPREF1058_RS17055 0.35 +0.5 529,483 - HMPREF1058_RS17055 0.51 -0.3 529,514 + HMPREF1058_RS17055 0.54 -0.4 529,514 + HMPREF1058_RS17055 0.54 -1.4 529,515 - HMPREF1058_RS17055 0.54 +1.3 529,515 - HMPREF1058_RS17055 0.54 -0.9 529,515 - HMPREF1058_RS17055 0.54 -0.2 529,530 - HMPREF1058_RS17055 0.55 -1.4 529,552 + HMPREF1058_RS17055 0.58 +3.3 529,610 - HMPREF1058_RS17055 0.63 +2.9 529,648 + HMPREF1058_RS17055 0.67 +1.0 529,761 - HMPREF1058_RS17055 0.78 -0.0 529,790 + HMPREF1058_RS17055 0.81 +0.5 529,793 + HMPREF1058_RS17055 0.82 -1.1 529,794 - HMPREF1058_RS17055 0.82 -1.5 529,796 - HMPREF1058_RS17055 0.82 +1.2 529,823 + +1.3 529,824 - HMPREF1058_RS17055 0.85 +1.2 529,824 - HMPREF1058_RS17055 0.85 -0.6 529,877 + +0.3 529,924 - -1.2 529,955 + +0.4 529,956 - -0.8 529,964 - -0.4
Or see this region's nucleotide sequence