Experiment: Mucin from porcine stomach type II 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS16995 and HMPREF1058_RS16990 are separated by 12 nucleotides HMPREF1058_RS16990 and HMPREF1058_RS16985 are separated by 116 nucleotides HMPREF1058_RS16985 and HMPREF1058_RS16980 overlap by 8 nucleotides HMPREF1058_RS16980 and HMPREF1058_RS16975 are separated by 155 nucleotides
HMPREF1058_RS16995: HMPREF1058_RS16995 - DUF4136 domain-containing protein, at 543,292 to 543,924
_RS16995
HMPREF1058_RS16990: HMPREF1058_RS16990 - porin family protein, at 543,937 to 544,575
_RS16990
HMPREF1058_RS16985: HMPREF1058_RS16985 - sensor histidine kinase, at 544,692 to 545,735
_RS16985
HMPREF1058_RS16980: HMPREF1058_RS16980 - response regulator transcription factor, at 545,728 to 546,513
_RS16980
HMPREF1058_RS16975: HMPREF1058_RS16975 - ATPase, at 546,669 to 547,508
_RS16975
Position (kb) 544
545
546 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 543.717 kb on + strand, within HMPREF1058_RS16995 at 543.718 kb on + strand, within HMPREF1058_RS16995 at 543.724 kb on + strand, within HMPREF1058_RS16995 at 543.725 kb on - strand, within HMPREF1058_RS16995 at 543.836 kb on - strand, within HMPREF1058_RS16995 at 543.870 kb on - strand at 543.975 kb on + strand at 543.975 kb on + strand at 543.995 kb on + strand at 544.017 kb on + strand, within HMPREF1058_RS16990 at 544.325 kb on - strand, within HMPREF1058_RS16990 at 544.352 kb on - strand, within HMPREF1058_RS16990 at 544.370 kb on - strand, within HMPREF1058_RS16990 at 544.383 kb on - strand, within HMPREF1058_RS16990 at 544.481 kb on + strand, within HMPREF1058_RS16990 at 544.483 kb on + strand, within HMPREF1058_RS16990 at 544.484 kb on - strand, within HMPREF1058_RS16990 at 544.486 kb on + strand, within HMPREF1058_RS16990 at 544.488 kb on + strand, within HMPREF1058_RS16990 at 544.488 kb on + strand at 544.489 kb on - strand, within HMPREF1058_RS16990 at 544.553 kb on + strand at 544.559 kb on + strand at 544.619 kb on - strand at 544.777 kb on + strand at 544.777 kb on + strand at 544.777 kb on + strand at 544.778 kb on - strand at 544.779 kb on + strand at 544.780 kb on - strand at 544.780 kb on - strand at 544.780 kb on - strand at 544.781 kb on + strand at 544.782 kb on - strand at 544.876 kb on + strand, within HMPREF1058_RS16985 at 545.069 kb on + strand, within HMPREF1058_RS16985 at 545.070 kb on - strand, within HMPREF1058_RS16985 at 545.106 kb on - strand, within HMPREF1058_RS16985 at 545.198 kb on - strand, within HMPREF1058_RS16985 at 545.382 kb on + strand, within HMPREF1058_RS16985 at 545.382 kb on + strand, within HMPREF1058_RS16985 at 545.384 kb on + strand, within HMPREF1058_RS16985 at 545.485 kb on + strand at 545.486 kb on - strand, within HMPREF1058_RS16985 at 545.486 kb on - strand, within HMPREF1058_RS16985 at 545.486 kb on - strand, within HMPREF1058_RS16985 at 545.733 kb on + strand at 545.788 kb on - strand at 545.820 kb on + strand, within HMPREF1058_RS16980 at 545.822 kb on + strand, within HMPREF1058_RS16980 at 545.823 kb on - strand, within HMPREF1058_RS16980 at 545.828 kb on + strand, within HMPREF1058_RS16980 at 546.025 kb on + strand, within HMPREF1058_RS16980 at 546.026 kb on - strand, within HMPREF1058_RS16980 at 546.215 kb on - strand, within HMPREF1058_RS16980 at 546.217 kb on - strand, within HMPREF1058_RS16980 at 546.236 kb on + strand, within HMPREF1058_RS16980 at 546.298 kb on - strand, within HMPREF1058_RS16980 at 546.335 kb on + strand, within HMPREF1058_RS16980 at 546.384 kb on - strand, within HMPREF1058_RS16980 at 546.483 kb on - strand at 546.525 kb on + strand at 546.526 kb on - strand at 546.545 kb on + strand at 546.548 kb on - strand at 546.575 kb on - strand at 546.577 kb on + strand at 546.578 kb on - strand at 546.579 kb on + strand at 546.647 kb on - strand at 546.659 kb on - strand at 546.673 kb on + strand at 546.679 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mucin from porcine stomach type II 2.5 mg/ml (C) remove 543,717 + HMPREF1058_RS16995 0.67 -0.8 543,718 + HMPREF1058_RS16995 0.67 +0.3 543,724 + HMPREF1058_RS16995 0.68 -0.2 543,725 - HMPREF1058_RS16995 0.68 +1.0 543,836 - HMPREF1058_RS16995 0.86 -1.2 543,870 - -0.0 543,975 + +0.1 543,975 + -0.0 543,995 + +0.5 544,017 + HMPREF1058_RS16990 0.13 -0.1 544,325 - HMPREF1058_RS16990 0.61 -0.7 544,352 - HMPREF1058_RS16990 0.65 -0.3 544,370 - HMPREF1058_RS16990 0.68 -0.1 544,383 - HMPREF1058_RS16990 0.70 +3.0 544,481 + HMPREF1058_RS16990 0.85 +0.7 544,483 + HMPREF1058_RS16990 0.85 -0.6 544,484 - HMPREF1058_RS16990 0.86 +0.0 544,486 + HMPREF1058_RS16990 0.86 -0.1 544,488 + HMPREF1058_RS16990 0.86 +1.6 544,488 + +0.0 544,489 - HMPREF1058_RS16990 0.86 +1.7 544,553 + -1.8 544,559 + -1.2 544,619 - -0.8 544,777 + +0.7 544,777 + -0.2 544,777 + -1.0 544,778 - -0.8 544,779 + +0.5 544,780 - -0.9 544,780 - +3.0 544,780 - -1.1 544,781 + -0.9 544,782 - -1.4 544,876 + HMPREF1058_RS16985 0.18 -0.8 545,069 + HMPREF1058_RS16985 0.36 -0.5 545,070 - HMPREF1058_RS16985 0.36 -1.1 545,106 - HMPREF1058_RS16985 0.40 -1.6 545,198 - HMPREF1058_RS16985 0.48 +0.2 545,382 + HMPREF1058_RS16985 0.66 -1.3 545,382 + HMPREF1058_RS16985 0.66 -1.8 545,384 + HMPREF1058_RS16985 0.66 +0.6 545,485 + -0.5 545,486 - HMPREF1058_RS16985 0.76 -0.8 545,486 - HMPREF1058_RS16985 0.76 -0.3 545,486 - HMPREF1058_RS16985 0.76 -0.4 545,733 + -0.5 545,788 - +1.2 545,820 + HMPREF1058_RS16980 0.12 -1.0 545,822 + HMPREF1058_RS16980 0.12 -0.1 545,823 - HMPREF1058_RS16980 0.12 -0.4 545,828 + HMPREF1058_RS16980 0.13 -0.6 546,025 + HMPREF1058_RS16980 0.38 +0.6 546,026 - HMPREF1058_RS16980 0.38 +0.5 546,215 - HMPREF1058_RS16980 0.62 -0.4 546,217 - HMPREF1058_RS16980 0.62 +0.1 546,236 + HMPREF1058_RS16980 0.65 -0.3 546,298 - HMPREF1058_RS16980 0.73 -0.3 546,335 + HMPREF1058_RS16980 0.77 +0.5 546,384 - HMPREF1058_RS16980 0.83 +0.0 546,483 - -0.7 546,525 + +1.0 546,526 - +0.6 546,545 + -0.5 546,548 - -0.8 546,575 - -0.9 546,577 + -0.0 546,578 - -0.4 546,579 + +1.0 546,647 - +1.1 546,659 - -0.8 546,673 + +0.2 546,679 + -0.5
Or see this region's nucleotide sequence