Experiment: Mucin from porcine stomach type II 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS16910 and HMPREF1058_RS16905 are separated by 144 nucleotides HMPREF1058_RS16905 and HMPREF1058_RS16900 overlap by 4 nucleotides HMPREF1058_RS16900 and HMPREF1058_RS16895 are separated by 73 nucleotides HMPREF1058_RS16895 and HMPREF1058_RS16890 are separated by 70 nucleotides
HMPREF1058_RS16910: HMPREF1058_RS16910 - hypothetical protein, at 565,186 to 565,626
_RS16910
HMPREF1058_RS16905: HMPREF1058_RS16905 - sigma-70 family RNA polymerase sigma factor, at 565,771 to 566,316
_RS16905
HMPREF1058_RS16900: HMPREF1058_RS16900 - hypothetical protein, at 566,313 to 566,690
_RS16900
HMPREF1058_RS16895: HMPREF1058_RS16895 - hypothetical protein, at 566,764 to 567,213
_RS16895
HMPREF1058_RS16890: HMPREF1058_RS16890 - hypothetical protein, at 567,284 to 568,276
_RS16890
Position (kb) 566
567 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 565.321 kb on - strand, within HMPREF1058_RS16910 at 565.534 kb on - strand, within HMPREF1058_RS16910 at 565.583 kb on - strand at 565.588 kb on - strand at 565.620 kb on - strand at 565.665 kb on + strand at 565.737 kb on - strand at 565.791 kb on + strand at 565.794 kb on + strand at 565.809 kb on - strand at 565.849 kb on + strand at 565.863 kb on - strand, within HMPREF1058_RS16905 at 565.875 kb on + strand, within HMPREF1058_RS16905 at 565.971 kb on + strand, within HMPREF1058_RS16905 at 565.981 kb on - strand, within HMPREF1058_RS16905 at 565.981 kb on - strand, within HMPREF1058_RS16905 at 565.990 kb on + strand, within HMPREF1058_RS16905 at 566.002 kb on + strand, within HMPREF1058_RS16905 at 566.003 kb on - strand, within HMPREF1058_RS16905 at 566.003 kb on - strand at 566.076 kb on + strand, within HMPREF1058_RS16905 at 566.076 kb on + strand, within HMPREF1058_RS16905 at 566.093 kb on + strand, within HMPREF1058_RS16905 at 566.093 kb on + strand, within HMPREF1058_RS16905 at 566.194 kb on + strand, within HMPREF1058_RS16905 at 566.262 kb on - strand at 566.288 kb on + strand at 566.291 kb on - strand at 566.293 kb on - strand at 566.293 kb on - strand at 566.294 kb on + strand at 566.295 kb on - strand at 566.413 kb on + strand, within HMPREF1058_RS16900 at 566.413 kb on + strand, within HMPREF1058_RS16900 at 566.423 kb on + strand, within HMPREF1058_RS16900 at 566.424 kb on - strand, within HMPREF1058_RS16900 at 566.425 kb on + strand, within HMPREF1058_RS16900 at 566.464 kb on + strand, within HMPREF1058_RS16900 at 566.464 kb on + strand, within HMPREF1058_RS16900 at 566.464 kb on + strand, within HMPREF1058_RS16900 at 566.469 kb on - strand, within HMPREF1058_RS16900 at 566.518 kb on - strand, within HMPREF1058_RS16900 at 566.549 kb on + strand, within HMPREF1058_RS16900 at 566.549 kb on + strand, within HMPREF1058_RS16900 at 566.554 kb on - strand, within HMPREF1058_RS16900 at 566.590 kb on + strand, within HMPREF1058_RS16900 at 566.623 kb on + strand, within HMPREF1058_RS16900 at 566.627 kb on + strand, within HMPREF1058_RS16900 at 566.628 kb on - strand, within HMPREF1058_RS16900 at 566.628 kb on - strand, within HMPREF1058_RS16900 at 566.710 kb on - strand at 566.710 kb on - strand at 566.710 kb on - strand at 566.754 kb on - strand at 566.754 kb on - strand at 566.766 kb on - strand at 566.839 kb on + strand, within HMPREF1058_RS16895 at 566.859 kb on - strand, within HMPREF1058_RS16895 at 566.912 kb on + strand, within HMPREF1058_RS16895 at 566.926 kb on - strand, within HMPREF1058_RS16895 at 566.926 kb on - strand, within HMPREF1058_RS16895 at 566.929 kb on + strand, within HMPREF1058_RS16895 at 566.929 kb on + strand, within HMPREF1058_RS16895 at 566.980 kb on + strand, within HMPREF1058_RS16895 at 566.981 kb on - strand, within HMPREF1058_RS16895 at 566.982 kb on + strand, within HMPREF1058_RS16895 at 566.993 kb on - strand, within HMPREF1058_RS16895 at 566.993 kb on - strand, within HMPREF1058_RS16895 at 567.016 kb on - strand, within HMPREF1058_RS16895 at 567.100 kb on - strand, within HMPREF1058_RS16895 at 567.148 kb on - strand, within HMPREF1058_RS16895 at 567.149 kb on + strand, within HMPREF1058_RS16895 at 567.149 kb on + strand, within HMPREF1058_RS16895 at 567.150 kb on - strand, within HMPREF1058_RS16895 at 567.150 kb on - strand, within HMPREF1058_RS16895 at 567.153 kb on + strand, within HMPREF1058_RS16895 at 567.154 kb on - strand, within HMPREF1058_RS16895 at 567.184 kb on - strand at 567.229 kb on - strand at 567.236 kb on - strand at 567.240 kb on - strand at 567.278 kb on + strand at 567.314 kb on + strand at 567.334 kb on + strand at 567.371 kb on + strand at 567.465 kb on + strand, within HMPREF1058_RS16890 at 567.466 kb on - strand, within HMPREF1058_RS16890 at 567.466 kb on - strand, within HMPREF1058_RS16890 at 567.467 kb on + strand, within HMPREF1058_RS16890 at 567.468 kb on - strand, within HMPREF1058_RS16890 at 567.468 kb on - strand, within HMPREF1058_RS16890 at 567.478 kb on + strand, within HMPREF1058_RS16890 at 567.519 kb on + strand, within HMPREF1058_RS16890 at 567.520 kb on - strand, within HMPREF1058_RS16890 at 567.540 kb on + strand, within HMPREF1058_RS16890 at 567.571 kb on - strand, within HMPREF1058_RS16890 at 567.572 kb on + strand, within HMPREF1058_RS16890 at 567.572 kb on + strand, within HMPREF1058_RS16890 at 567.572 kb on + strand, within HMPREF1058_RS16890 at 567.573 kb on - strand, within HMPREF1058_RS16890 at 567.596 kb on - strand, within HMPREF1058_RS16890 at 567.654 kb on - strand, within HMPREF1058_RS16890 at 567.661 kb on + strand, within HMPREF1058_RS16890 at 567.661 kb on + strand, within HMPREF1058_RS16890
Per-strain Table
Position Strand Gene LocusTag Fraction Mucin from porcine stomach type II 2.5 mg/ml (C) remove 565,321 - HMPREF1058_RS16910 0.31 -1.0 565,534 - HMPREF1058_RS16910 0.79 +1.6 565,583 - -1.3 565,588 - -1.0 565,620 - -1.3 565,665 + +0.6 565,737 - +0.0 565,791 + -1.3 565,794 + +0.0 565,809 - +2.0 565,849 + +0.6 565,863 - HMPREF1058_RS16905 0.17 +0.4 565,875 + HMPREF1058_RS16905 0.19 +2.0 565,971 + HMPREF1058_RS16905 0.37 +0.0 565,981 - HMPREF1058_RS16905 0.38 -0.1 565,981 - HMPREF1058_RS16905 0.38 -0.8 565,990 + HMPREF1058_RS16905 0.40 -0.5 566,002 + HMPREF1058_RS16905 0.42 -0.2 566,003 - HMPREF1058_RS16905 0.42 -1.3 566,003 - -0.8 566,076 + HMPREF1058_RS16905 0.56 +0.3 566,076 + HMPREF1058_RS16905 0.56 -0.7 566,093 + HMPREF1058_RS16905 0.59 +0.4 566,093 + HMPREF1058_RS16905 0.59 -0.3 566,194 + HMPREF1058_RS16905 0.77 +0.4 566,262 - -0.8 566,288 + -0.3 566,291 - -0.8 566,293 - -0.8 566,293 - +0.5 566,294 + +0.2 566,295 - -0.3 566,413 + HMPREF1058_RS16900 0.26 -0.1 566,413 + HMPREF1058_RS16900 0.26 -0.1 566,423 + HMPREF1058_RS16900 0.29 -1.0 566,424 - HMPREF1058_RS16900 0.29 -1.4 566,425 + HMPREF1058_RS16900 0.30 -0.4 566,464 + HMPREF1058_RS16900 0.40 -1.1 566,464 + HMPREF1058_RS16900 0.40 -0.8 566,464 + HMPREF1058_RS16900 0.40 -0.1 566,469 - HMPREF1058_RS16900 0.41 -2.0 566,518 - HMPREF1058_RS16900 0.54 -0.6 566,549 + HMPREF1058_RS16900 0.62 -0.1 566,549 + HMPREF1058_RS16900 0.62 +0.6 566,554 - HMPREF1058_RS16900 0.64 -0.9 566,590 + HMPREF1058_RS16900 0.73 -1.4 566,623 + HMPREF1058_RS16900 0.82 -1.5 566,627 + HMPREF1058_RS16900 0.83 -1.9 566,628 - HMPREF1058_RS16900 0.83 +1.0 566,628 - HMPREF1058_RS16900 0.83 -1.0 566,710 - -0.3 566,710 - -0.6 566,710 - +0.0 566,754 - +1.6 566,754 - -0.0 566,766 - +0.1 566,839 + HMPREF1058_RS16895 0.17 -0.3 566,859 - HMPREF1058_RS16895 0.21 +1.4 566,912 + HMPREF1058_RS16895 0.33 +0.1 566,926 - HMPREF1058_RS16895 0.36 +1.0 566,926 - HMPREF1058_RS16895 0.36 -0.5 566,929 + HMPREF1058_RS16895 0.37 -0.8 566,929 + HMPREF1058_RS16895 0.37 +1.6 566,980 + HMPREF1058_RS16895 0.48 -1.8 566,981 - HMPREF1058_RS16895 0.48 -1.1 566,982 + HMPREF1058_RS16895 0.48 -0.8 566,993 - HMPREF1058_RS16895 0.51 -0.3 566,993 - HMPREF1058_RS16895 0.51 -0.6 567,016 - HMPREF1058_RS16895 0.56 -2.6 567,100 - HMPREF1058_RS16895 0.75 -1.8 567,148 - HMPREF1058_RS16895 0.85 -0.7 567,149 + HMPREF1058_RS16895 0.86 -0.4 567,149 + HMPREF1058_RS16895 0.86 -1.4 567,150 - HMPREF1058_RS16895 0.86 -0.9 567,150 - HMPREF1058_RS16895 0.86 -0.5 567,153 + HMPREF1058_RS16895 0.86 +1.0 567,154 - HMPREF1058_RS16895 0.87 -2.8 567,184 - -1.5 567,229 - -0.4 567,236 - -1.4 567,240 - -0.1 567,278 + -1.4 567,314 + +1.0 567,334 + -0.7 567,371 + -0.3 567,465 + HMPREF1058_RS16890 0.18 +0.4 567,466 - HMPREF1058_RS16890 0.18 -1.0 567,466 - HMPREF1058_RS16890 0.18 +0.0 567,467 + HMPREF1058_RS16890 0.18 +0.2 567,468 - HMPREF1058_RS16890 0.19 -1.8 567,468 - HMPREF1058_RS16890 0.19 +0.3 567,478 + HMPREF1058_RS16890 0.20 +0.4 567,519 + HMPREF1058_RS16890 0.24 +0.3 567,520 - HMPREF1058_RS16890 0.24 -0.1 567,540 + HMPREF1058_RS16890 0.26 +0.2 567,571 - HMPREF1058_RS16890 0.29 +0.5 567,572 + HMPREF1058_RS16890 0.29 -0.3 567,572 + HMPREF1058_RS16890 0.29 +0.2 567,572 + HMPREF1058_RS16890 0.29 -1.8 567,573 - HMPREF1058_RS16890 0.29 +1.6 567,596 - HMPREF1058_RS16890 0.31 +0.0 567,654 - HMPREF1058_RS16890 0.37 +2.0 567,661 + HMPREF1058_RS16890 0.38 +0.1 567,661 + HMPREF1058_RS16890 0.38 +0.0
Or see this region's nucleotide sequence