Experiment: Mucin from porcine stomach type II 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS15735 and HMPREF1058_RS15730 are separated by 7 nucleotides HMPREF1058_RS15730 and HMPREF1058_RS15725 are separated by 307 nucleotides HMPREF1058_RS15725 and HMPREF1058_RS15720 are separated by 33 nucleotides HMPREF1058_RS15720 and HMPREF1058_RS15715 are separated by 69 nucleotides
HMPREF1058_RS15735: HMPREF1058_RS15735 - hypothetical protein, at 847,762 to 848,124
_RS15735
HMPREF1058_RS15730: HMPREF1058_RS15730 - RNA polymerase sigma factor, at 848,132 to 848,668
_RS15730
HMPREF1058_RS15725: HMPREF1058_RS15725 - DUF4476 domain-containing protein, at 848,976 to 849,647
_RS15725
HMPREF1058_RS15720: HMPREF1058_RS15720 - DUF4476 domain-containing protein, at 849,681 to 850,292
_RS15720
HMPREF1058_RS15715: HMPREF1058_RS15715 - heavy metal-binding domain-containing protein, at 850,362 to 850,685
_RS15715
Position (kb) 848
849
850 Strain fitness (log2 ratio) -2
-1
0
1
2 at 847.996 kb on - strand, within HMPREF1058_RS15735 at 848.008 kb on - strand, within HMPREF1058_RS15735 at 848.074 kb on - strand, within HMPREF1058_RS15735 at 848.141 kb on + strand at 848.142 kb on - strand at 848.148 kb on + strand at 848.173 kb on - strand at 848.232 kb on + strand, within HMPREF1058_RS15730 at 848.247 kb on + strand, within HMPREF1058_RS15730 at 848.331 kb on + strand, within HMPREF1058_RS15730 at 848.332 kb on - strand, within HMPREF1058_RS15730 at 848.340 kb on + strand, within HMPREF1058_RS15730 at 848.360 kb on - strand, within HMPREF1058_RS15730 at 848.414 kb on - strand, within HMPREF1058_RS15730 at 848.553 kb on - strand, within HMPREF1058_RS15730 at 848.578 kb on - strand, within HMPREF1058_RS15730 at 848.580 kb on - strand, within HMPREF1058_RS15730 at 848.580 kb on - strand, within HMPREF1058_RS15730 at 848.611 kb on + strand, within HMPREF1058_RS15730 at 848.639 kb on + strand at 848.640 kb on - strand at 848.781 kb on - strand at 848.874 kb on - strand at 848.880 kb on + strand at 848.905 kb on + strand at 848.929 kb on + strand at 848.932 kb on - strand at 849.002 kb on - strand at 849.017 kb on + strand at 849.018 kb on - strand at 849.047 kb on + strand, within HMPREF1058_RS15725 at 849.158 kb on + strand, within HMPREF1058_RS15725 at 849.159 kb on - strand, within HMPREF1058_RS15725 at 849.198 kb on - strand, within HMPREF1058_RS15725 at 849.301 kb on + strand, within HMPREF1058_RS15725 at 849.301 kb on + strand, within HMPREF1058_RS15725 at 849.410 kb on + strand, within HMPREF1058_RS15725 at 849.411 kb on - strand, within HMPREF1058_RS15725 at 849.430 kb on + strand, within HMPREF1058_RS15725 at 849.431 kb on - strand, within HMPREF1058_RS15725 at 849.448 kb on + strand, within HMPREF1058_RS15725 at 849.526 kb on + strand, within HMPREF1058_RS15725 at 849.527 kb on - strand, within HMPREF1058_RS15725 at 849.674 kb on + strand at 849.701 kb on - strand at 849.704 kb on - strand at 849.719 kb on + strand at 849.719 kb on + strand at 849.753 kb on - strand, within HMPREF1058_RS15720 at 849.928 kb on + strand, within HMPREF1058_RS15720 at 849.929 kb on - strand, within HMPREF1058_RS15720 at 849.929 kb on - strand, within HMPREF1058_RS15720 at 849.960 kb on - strand, within HMPREF1058_RS15720 at 849.982 kb on + strand, within HMPREF1058_RS15720 at 849.985 kb on - strand, within HMPREF1058_RS15720 at 850.103 kb on - strand, within HMPREF1058_RS15720 at 850.201 kb on + strand, within HMPREF1058_RS15720 at 850.202 kb on - strand, within HMPREF1058_RS15720 at 850.202 kb on - strand, within HMPREF1058_RS15720 at 850.223 kb on + strand, within HMPREF1058_RS15720 at 850.276 kb on + strand at 850.279 kb on + strand at 850.293 kb on + strand at 850.294 kb on - strand at 850.310 kb on + strand at 850.409 kb on + strand, within HMPREF1058_RS15715 at 850.409 kb on + strand, within HMPREF1058_RS15715 at 850.410 kb on - strand, within HMPREF1058_RS15715 at 850.410 kb on - strand, within HMPREF1058_RS15715 at 850.455 kb on + strand, within HMPREF1058_RS15715 at 850.455 kb on + strand, within HMPREF1058_RS15715 at 850.463 kb on + strand, within HMPREF1058_RS15715 at 850.509 kb on - strand, within HMPREF1058_RS15715 at 850.623 kb on + strand, within HMPREF1058_RS15715 at 850.633 kb on + strand, within HMPREF1058_RS15715 at 850.634 kb on - strand, within HMPREF1058_RS15715 at 850.646 kb on + strand, within HMPREF1058_RS15715 at 850.646 kb on + strand, within HMPREF1058_RS15715
Per-strain Table
Position Strand Gene LocusTag Fraction Mucin from porcine stomach type II 2.5 mg/ml (C) remove 847,996 - HMPREF1058_RS15735 0.64 -0.4 848,008 - HMPREF1058_RS15735 0.68 -0.7 848,074 - HMPREF1058_RS15735 0.86 -1.5 848,141 + -2.2 848,142 - -0.1 848,148 + +0.4 848,173 - +2.0 848,232 + HMPREF1058_RS15730 0.19 +0.6 848,247 + HMPREF1058_RS15730 0.21 -0.8 848,331 + HMPREF1058_RS15730 0.37 +0.4 848,332 - HMPREF1058_RS15730 0.37 +1.2 848,340 + HMPREF1058_RS15730 0.39 -0.6 848,360 - HMPREF1058_RS15730 0.42 +0.4 848,414 - HMPREF1058_RS15730 0.53 -0.4 848,553 - HMPREF1058_RS15730 0.78 -0.6 848,578 - HMPREF1058_RS15730 0.83 +0.7 848,580 - HMPREF1058_RS15730 0.83 -0.2 848,580 - HMPREF1058_RS15730 0.83 -0.2 848,611 + HMPREF1058_RS15730 0.89 +1.2 848,639 + +1.0 848,640 - -1.1 848,781 - +1.0 848,874 - +1.0 848,880 + -1.2 848,905 + +0.9 848,929 + +0.3 848,932 - -2.0 849,002 - -0.5 849,017 + +0.3 849,018 - -0.0 849,047 + HMPREF1058_RS15725 0.11 -0.5 849,158 + HMPREF1058_RS15725 0.27 -0.3 849,159 - HMPREF1058_RS15725 0.27 -0.2 849,198 - HMPREF1058_RS15725 0.33 -0.5 849,301 + HMPREF1058_RS15725 0.48 +0.8 849,301 + HMPREF1058_RS15725 0.48 -1.1 849,410 + HMPREF1058_RS15725 0.65 -0.6 849,411 - HMPREF1058_RS15725 0.65 -0.4 849,430 + HMPREF1058_RS15725 0.68 -0.1 849,431 - HMPREF1058_RS15725 0.68 -0.6 849,448 + HMPREF1058_RS15725 0.70 -1.4 849,526 + HMPREF1058_RS15725 0.82 -1.8 849,527 - HMPREF1058_RS15725 0.82 -0.6 849,674 + -2.5 849,701 - -0.3 849,704 - +0.3 849,719 + -0.4 849,719 + -2.1 849,753 - HMPREF1058_RS15720 0.12 -0.3 849,928 + HMPREF1058_RS15720 0.40 -1.4 849,929 - HMPREF1058_RS15720 0.41 -0.7 849,929 - HMPREF1058_RS15720 0.41 -0.4 849,960 - HMPREF1058_RS15720 0.46 +1.0 849,982 + HMPREF1058_RS15720 0.49 -1.0 849,985 - HMPREF1058_RS15720 0.50 +0.3 850,103 - HMPREF1058_RS15720 0.69 +0.4 850,201 + HMPREF1058_RS15720 0.85 -0.8 850,202 - HMPREF1058_RS15720 0.85 +0.2 850,202 - HMPREF1058_RS15720 0.85 -1.0 850,223 + HMPREF1058_RS15720 0.89 -0.7 850,276 + +2.0 850,279 + -0.3 850,293 + -0.1 850,294 - -0.5 850,310 + +1.3 850,409 + HMPREF1058_RS15715 0.15 +0.6 850,409 + HMPREF1058_RS15715 0.15 -1.9 850,410 - HMPREF1058_RS15715 0.15 -0.2 850,410 - HMPREF1058_RS15715 0.15 -1.7 850,455 + HMPREF1058_RS15715 0.29 -0.3 850,455 + HMPREF1058_RS15715 0.29 +0.3 850,463 + HMPREF1058_RS15715 0.31 -1.0 850,509 - HMPREF1058_RS15715 0.45 -0.6 850,623 + HMPREF1058_RS15715 0.81 -0.5 850,633 + HMPREF1058_RS15715 0.84 -1.4 850,634 - HMPREF1058_RS15715 0.84 +1.2 850,646 + HMPREF1058_RS15715 0.88 -1.1 850,646 + HMPREF1058_RS15715 0.88 +0.1
Or see this region's nucleotide sequence