Experiment: Mucin from porcine stomach type II 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS15670 and HMPREF1058_RS15665 are separated by 46 nucleotides HMPREF1058_RS15665 and HMPREF1058_RS15660 are separated by 40 nucleotides
HMPREF1058_RS15670: HMPREF1058_RS15670 - galactose mutarotase, at 860,665 to 861,759
_RS15670
HMPREF1058_RS15665: HMPREF1058_RS15665 - MFS transporter, at 861,806 to 863,146
_RS15665
HMPREF1058_RS15660: HMPREF1058_RS15660 - galactokinase, at 863,187 to 864,341
_RS15660
Position (kb) 861
862
863
864 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 860.816 kb on + strand, within HMPREF1058_RS15670 at 860.817 kb on - strand, within HMPREF1058_RS15670 at 860.817 kb on - strand at 860.821 kb on - strand, within HMPREF1058_RS15670 at 860.848 kb on + strand, within HMPREF1058_RS15670 at 860.849 kb on - strand, within HMPREF1058_RS15670 at 860.849 kb on - strand, within HMPREF1058_RS15670 at 860.874 kb on + strand, within HMPREF1058_RS15670 at 860.877 kb on + strand, within HMPREF1058_RS15670 at 860.878 kb on - strand, within HMPREF1058_RS15670 at 860.879 kb on + strand, within HMPREF1058_RS15670 at 860.879 kb on + strand, within HMPREF1058_RS15670 at 860.890 kb on - strand at 860.980 kb on + strand, within HMPREF1058_RS15670 at 860.980 kb on + strand, within HMPREF1058_RS15670 at 860.980 kb on + strand at 860.991 kb on + strand, within HMPREF1058_RS15670 at 861.155 kb on + strand, within HMPREF1058_RS15670 at 861.159 kb on + strand, within HMPREF1058_RS15670 at 861.215 kb on + strand, within HMPREF1058_RS15670 at 861.216 kb on - strand, within HMPREF1058_RS15670 at 861.310 kb on + strand, within HMPREF1058_RS15670 at 861.329 kb on + strand, within HMPREF1058_RS15670 at 861.329 kb on + strand, within HMPREF1058_RS15670 at 861.359 kb on + strand, within HMPREF1058_RS15670 at 861.460 kb on + strand at 861.460 kb on + strand, within HMPREF1058_RS15670 at 861.460 kb on + strand, within HMPREF1058_RS15670 at 861.460 kb on + strand, within HMPREF1058_RS15670 at 861.465 kb on - strand, within HMPREF1058_RS15670 at 861.544 kb on + strand, within HMPREF1058_RS15670 at 861.549 kb on + strand, within HMPREF1058_RS15670 at 861.571 kb on + strand, within HMPREF1058_RS15670 at 861.573 kb on + strand, within HMPREF1058_RS15670 at 861.573 kb on + strand, within HMPREF1058_RS15670 at 861.574 kb on - strand, within HMPREF1058_RS15670 at 861.718 kb on + strand at 861.771 kb on - strand at 861.776 kb on - strand at 861.783 kb on - strand at 861.830 kb on - strand at 862.009 kb on + strand, within HMPREF1058_RS15665 at 862.059 kb on + strand, within HMPREF1058_RS15665 at 862.088 kb on - strand at 862.111 kb on + strand, within HMPREF1058_RS15665 at 862.111 kb on + strand, within HMPREF1058_RS15665 at 862.112 kb on - strand, within HMPREF1058_RS15665 at 862.113 kb on + strand, within HMPREF1058_RS15665 at 862.114 kb on - strand, within HMPREF1058_RS15665 at 862.119 kb on + strand, within HMPREF1058_RS15665 at 862.136 kb on + strand, within HMPREF1058_RS15665 at 862.137 kb on - strand, within HMPREF1058_RS15665 at 862.156 kb on + strand, within HMPREF1058_RS15665 at 862.163 kb on + strand, within HMPREF1058_RS15665 at 862.197 kb on + strand, within HMPREF1058_RS15665 at 862.201 kb on + strand, within HMPREF1058_RS15665 at 862.374 kb on + strand, within HMPREF1058_RS15665 at 862.375 kb on - strand, within HMPREF1058_RS15665 at 862.516 kb on + strand at 862.524 kb on + strand, within HMPREF1058_RS15665 at 862.524 kb on + strand, within HMPREF1058_RS15665 at 862.530 kb on + strand, within HMPREF1058_RS15665 at 862.548 kb on - strand, within HMPREF1058_RS15665 at 862.551 kb on + strand, within HMPREF1058_RS15665 at 862.552 kb on - strand, within HMPREF1058_RS15665 at 862.589 kb on + strand, within HMPREF1058_RS15665 at 862.655 kb on - strand, within HMPREF1058_RS15665 at 862.667 kb on + strand at 862.825 kb on + strand, within HMPREF1058_RS15665 at 863.048 kb on - strand at 863.096 kb on + strand at 863.096 kb on + strand at 863.151 kb on - strand at 863.163 kb on + strand at 863.164 kb on - strand at 863.177 kb on + strand at 863.194 kb on + strand at 863.194 kb on + strand at 863.194 kb on + strand at 863.195 kb on - strand at 863.195 kb on - strand at 863.195 kb on - strand at 863.199 kb on + strand at 863.199 kb on + strand at 863.203 kb on + strand at 863.249 kb on - strand at 863.251 kb on - strand at 863.271 kb on - strand at 863.277 kb on - strand at 863.326 kb on + strand, within HMPREF1058_RS15660 at 863.330 kb on + strand, within HMPREF1058_RS15660 at 863.336 kb on + strand, within HMPREF1058_RS15660 at 863.375 kb on - strand, within HMPREF1058_RS15660 at 863.407 kb on + strand, within HMPREF1058_RS15660 at 863.407 kb on + strand, within HMPREF1058_RS15660 at 863.407 kb on + strand, within HMPREF1058_RS15660 at 863.408 kb on - strand, within HMPREF1058_RS15660 at 863.460 kb on - strand, within HMPREF1058_RS15660 at 863.460 kb on - strand, within HMPREF1058_RS15660 at 863.553 kb on - strand, within HMPREF1058_RS15660 at 863.579 kb on + strand, within HMPREF1058_RS15660 at 863.580 kb on - strand, within HMPREF1058_RS15660 at 863.584 kb on - strand, within HMPREF1058_RS15660 at 863.648 kb on - strand, within HMPREF1058_RS15660 at 863.671 kb on - strand, within HMPREF1058_RS15660 at 863.671 kb on - strand, within HMPREF1058_RS15660 at 863.681 kb on - strand, within HMPREF1058_RS15660 at 863.770 kb on - strand, within HMPREF1058_RS15660 at 863.770 kb on - strand, within HMPREF1058_RS15660 at 863.930 kb on + strand, within HMPREF1058_RS15660 at 863.979 kb on + strand, within HMPREF1058_RS15660 at 863.979 kb on + strand, within HMPREF1058_RS15660 at 863.981 kb on + strand, within HMPREF1058_RS15660 at 863.981 kb on + strand, within HMPREF1058_RS15660 at 863.994 kb on + strand, within HMPREF1058_RS15660 at 864.019 kb on + strand, within HMPREF1058_RS15660 at 864.065 kb on - strand, within HMPREF1058_RS15660 at 864.115 kb on + strand, within HMPREF1058_RS15660 at 864.115 kb on + strand, within HMPREF1058_RS15660
Per-strain Table
Position Strand Gene LocusTag Fraction Mucin from porcine stomach type II 2.5 mg/ml (C) remove 860,816 + HMPREF1058_RS15670 0.14 -1.0 860,817 - HMPREF1058_RS15670 0.14 +0.2 860,817 - +0.6 860,821 - HMPREF1058_RS15670 0.14 -0.4 860,848 + HMPREF1058_RS15670 0.17 -1.9 860,849 - HMPREF1058_RS15670 0.17 -1.0 860,849 - HMPREF1058_RS15670 0.17 -0.3 860,874 + HMPREF1058_RS15670 0.19 -3.5 860,877 + HMPREF1058_RS15670 0.19 -1.7 860,878 - HMPREF1058_RS15670 0.19 +0.1 860,879 + HMPREF1058_RS15670 0.20 -0.2 860,879 + HMPREF1058_RS15670 0.20 -0.1 860,890 - -0.6 860,980 + HMPREF1058_RS15670 0.29 -0.6 860,980 + HMPREF1058_RS15670 0.29 -1.9 860,980 + +0.2 860,991 + HMPREF1058_RS15670 0.30 +0.2 861,155 + HMPREF1058_RS15670 0.45 -0.3 861,159 + HMPREF1058_RS15670 0.45 -0.9 861,215 + HMPREF1058_RS15670 0.50 -1.3 861,216 - HMPREF1058_RS15670 0.50 -0.8 861,310 + HMPREF1058_RS15670 0.59 +0.3 861,329 + HMPREF1058_RS15670 0.61 +0.5 861,329 + HMPREF1058_RS15670 0.61 -0.3 861,359 + HMPREF1058_RS15670 0.63 -0.1 861,460 + +0.4 861,460 + HMPREF1058_RS15670 0.73 +0.7 861,460 + HMPREF1058_RS15670 0.73 -0.8 861,460 + HMPREF1058_RS15670 0.73 +0.7 861,465 - HMPREF1058_RS15670 0.73 -0.6 861,544 + HMPREF1058_RS15670 0.80 -1.0 861,549 + HMPREF1058_RS15670 0.81 +0.5 861,571 + HMPREF1058_RS15670 0.83 +0.4 861,573 + HMPREF1058_RS15670 0.83 +0.5 861,573 + HMPREF1058_RS15670 0.83 -0.0 861,574 - HMPREF1058_RS15670 0.83 -1.6 861,718 + -0.8 861,771 - -2.0 861,776 - -1.8 861,783 - -2.0 861,830 - -1.6 862,009 + HMPREF1058_RS15665 0.15 +1.8 862,059 + HMPREF1058_RS15665 0.19 -2.2 862,088 - -1.2 862,111 + HMPREF1058_RS15665 0.23 +0.6 862,111 + HMPREF1058_RS15665 0.23 -0.7 862,112 - HMPREF1058_RS15665 0.23 -1.7 862,113 + HMPREF1058_RS15665 0.23 -0.6 862,114 - HMPREF1058_RS15665 0.23 +1.5 862,119 + HMPREF1058_RS15665 0.23 -1.1 862,136 + HMPREF1058_RS15665 0.25 -0.6 862,137 - HMPREF1058_RS15665 0.25 +0.2 862,156 + HMPREF1058_RS15665 0.26 -1.6 862,163 + HMPREF1058_RS15665 0.27 -2.5 862,197 + HMPREF1058_RS15665 0.29 -0.8 862,201 + HMPREF1058_RS15665 0.29 -1.4 862,374 + HMPREF1058_RS15665 0.42 +0.5 862,375 - HMPREF1058_RS15665 0.42 -1.3 862,516 + -0.3 862,524 + HMPREF1058_RS15665 0.54 -0.9 862,524 + HMPREF1058_RS15665 0.54 -0.6 862,530 + HMPREF1058_RS15665 0.54 -1.6 862,548 - HMPREF1058_RS15665 0.55 -0.8 862,551 + HMPREF1058_RS15665 0.56 -0.1 862,552 - HMPREF1058_RS15665 0.56 +0.4 862,589 + HMPREF1058_RS15665 0.58 +0.5 862,655 - HMPREF1058_RS15665 0.63 -1.6 862,667 + +0.8 862,825 + HMPREF1058_RS15665 0.76 +0.4 863,048 - -3.1 863,096 + +1.2 863,096 + -0.5 863,151 - -1.3 863,163 + -1.0 863,164 - -1.3 863,177 + +0.2 863,194 + -0.6 863,194 + -1.0 863,194 + -1.5 863,195 - -1.7 863,195 - -1.4 863,195 - -1.0 863,199 + -0.3 863,199 + -0.9 863,203 + -0.8 863,249 - -1.5 863,251 - -1.1 863,271 - -0.9 863,277 - -0.3 863,326 + HMPREF1058_RS15660 0.12 +1.1 863,330 + HMPREF1058_RS15660 0.12 -1.3 863,336 + HMPREF1058_RS15660 0.13 -1.0 863,375 - HMPREF1058_RS15660 0.16 +0.2 863,407 + HMPREF1058_RS15660 0.19 -1.0 863,407 + HMPREF1058_RS15660 0.19 -1.0 863,407 + HMPREF1058_RS15660 0.19 -0.9 863,408 - HMPREF1058_RS15660 0.19 -0.7 863,460 - HMPREF1058_RS15660 0.24 +0.0 863,460 - HMPREF1058_RS15660 0.24 -1.0 863,553 - HMPREF1058_RS15660 0.32 -0.9 863,579 + HMPREF1058_RS15660 0.34 -0.7 863,580 - HMPREF1058_RS15660 0.34 -0.1 863,584 - HMPREF1058_RS15660 0.34 -0.1 863,648 - HMPREF1058_RS15660 0.40 -2.0 863,671 - HMPREF1058_RS15660 0.42 -0.3 863,671 - HMPREF1058_RS15660 0.42 -0.0 863,681 - HMPREF1058_RS15660 0.43 -1.1 863,770 - HMPREF1058_RS15660 0.50 -0.9 863,770 - HMPREF1058_RS15660 0.50 -0.6 863,930 + HMPREF1058_RS15660 0.64 -0.3 863,979 + HMPREF1058_RS15660 0.69 -0.4 863,979 + HMPREF1058_RS15660 0.69 +0.8 863,981 + HMPREF1058_RS15660 0.69 +0.1 863,981 + HMPREF1058_RS15660 0.69 -1.1 863,994 + HMPREF1058_RS15660 0.70 -0.8 864,019 + HMPREF1058_RS15660 0.72 -0.4 864,065 - HMPREF1058_RS15660 0.76 -0.9 864,115 + HMPREF1058_RS15660 0.80 +0.3 864,115 + HMPREF1058_RS15660 0.80 +0.2
Or see this region's nucleotide sequence