Experiment: Mucin from porcine stomach type II 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS15270 and HMPREF1058_RS15265 are separated by 120 nucleotides HMPREF1058_RS15265 and HMPREF1058_RS15260 are separated by 288 nucleotides
HMPREF1058_RS15270: HMPREF1058_RS15270 - 7-cyano-7-deazaguanine synthase QueC, at 962,019 to 962,690
_RS15270
HMPREF1058_RS15265: HMPREF1058_RS15265 - queuosine precursor transporter, at 962,811 to 963,497
_RS15265
HMPREF1058_RS15260: HMPREF1058_RS15260 - ornithine--oxo-acid transaminase, at 963,786 to 965,021
_RS15260
Position (kb) 962
963
964 Strain fitness (log2 ratio) -2
-1
0
1 at 961.907 kb on + strand at 961.908 kb on - strand at 961.992 kb on + strand at 961.992 kb on + strand at 962.219 kb on + strand, within HMPREF1058_RS15270 at 962.336 kb on + strand, within HMPREF1058_RS15270 at 962.411 kb on + strand, within HMPREF1058_RS15270 at 962.412 kb on - strand, within HMPREF1058_RS15270 at 962.412 kb on - strand, within HMPREF1058_RS15270 at 962.415 kb on - strand, within HMPREF1058_RS15270 at 962.491 kb on - strand, within HMPREF1058_RS15270 at 962.586 kb on - strand, within HMPREF1058_RS15270 at 962.599 kb on + strand, within HMPREF1058_RS15270 at 962.710 kb on + strand at 962.714 kb on - strand at 962.714 kb on - strand at 962.762 kb on - strand at 962.763 kb on + strand at 962.887 kb on + strand, within HMPREF1058_RS15265 at 962.887 kb on + strand, within HMPREF1058_RS15265 at 963.047 kb on + strand, within HMPREF1058_RS15265 at 963.329 kb on + strand, within HMPREF1058_RS15265 at 963.346 kb on + strand, within HMPREF1058_RS15265 at 963.347 kb on - strand at 963.438 kb on + strand at 963.439 kb on - strand at 963.439 kb on - strand at 963.477 kb on + strand at 963.478 kb on - strand at 963.478 kb on - strand at 963.478 kb on - strand at 963.485 kb on + strand at 963.486 kb on - strand at 963.524 kb on - strand at 963.529 kb on - strand at 963.612 kb on + strand at 963.835 kb on - strand at 963.848 kb on + strand at 963.879 kb on - strand at 964.069 kb on + strand, within HMPREF1058_RS15260 at 964.069 kb on + strand, within HMPREF1058_RS15260 at 964.070 kb on - strand, within HMPREF1058_RS15260 at 964.101 kb on + strand, within HMPREF1058_RS15260 at 964.402 kb on + strand, within HMPREF1058_RS15260 at 964.402 kb on + strand, within HMPREF1058_RS15260 at 964.403 kb on - strand, within HMPREF1058_RS15260 at 964.403 kb on - strand, within HMPREF1058_RS15260
Per-strain Table
Position Strand Gene LocusTag Fraction Mucin from porcine stomach type II 2.5 mg/ml (C) remove 961,907 + -0.4 961,908 - -0.3 961,992 + -1.3 961,992 + -0.8 962,219 + HMPREF1058_RS15270 0.30 -0.2 962,336 + HMPREF1058_RS15270 0.47 -0.2 962,411 + HMPREF1058_RS15270 0.58 +1.3 962,412 - HMPREF1058_RS15270 0.58 -2.7 962,412 - HMPREF1058_RS15270 0.58 +0.2 962,415 - HMPREF1058_RS15270 0.59 +0.5 962,491 - HMPREF1058_RS15270 0.70 +0.1 962,586 - HMPREF1058_RS15270 0.84 -0.8 962,599 + HMPREF1058_RS15270 0.86 +0.5 962,710 + -2.2 962,714 - -0.1 962,714 - +0.8 962,762 - +0.2 962,763 + -2.4 962,887 + HMPREF1058_RS15265 0.11 -1.2 962,887 + HMPREF1058_RS15265 0.11 -1.5 963,047 + HMPREF1058_RS15265 0.34 -1.7 963,329 + HMPREF1058_RS15265 0.75 -1.2 963,346 + HMPREF1058_RS15265 0.78 -0.2 963,347 - -1.0 963,438 + -0.6 963,439 - -0.4 963,439 - +0.4 963,477 + -2.4 963,478 - +0.5 963,478 - +0.3 963,478 - +0.4 963,485 + -0.0 963,486 - +0.1 963,524 - +0.8 963,529 - +0.7 963,612 + +0.6 963,835 - -0.1 963,848 + -1.1 963,879 - -0.0 964,069 + HMPREF1058_RS15260 0.23 -0.6 964,069 + HMPREF1058_RS15260 0.23 +0.0 964,070 - HMPREF1058_RS15260 0.23 -0.4 964,101 + HMPREF1058_RS15260 0.25 +0.2 964,402 + HMPREF1058_RS15260 0.50 -0.5 964,402 + HMPREF1058_RS15260 0.50 -0.4 964,403 - HMPREF1058_RS15260 0.50 +0.5 964,403 - HMPREF1058_RS15260 0.50 +0.1
Or see this region's nucleotide sequence