Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS14750

Experiment: Mucin from porcine stomach type II 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mucin from porcine stomach type II 2.5 mg/ml (C)
1,112,311	-		HMPREF1058_RS14755	0.24	+1.0
1,112,349	+		HMPREF1058_RS14755	0.27	-1.2
1,112,350	-		HMPREF1058_RS14755	0.27	-1.0
1,112,354	+		HMPREF1058_RS14755	0.28	-1.1
1,112,354	+		HMPREF1058_RS14755	0.28	-1.2
1,112,355	-		HMPREF1058_RS14755	0.28	-1.9
1,112,355	-		HMPREF1058_RS14755	0.28	-3.9
1,112,369	+		HMPREF1058_RS14755	0.29	-0.8
1,112,379	+		HMPREF1058_RS14755	0.30	-0.9
1,112,381	+		HMPREF1058_RS14755	0.30	-1.8
1,112,381	+		HMPREF1058_RS14755	0.30	-1.1
1,112,381	+		HMPREF1058_RS14755	0.30	-4.3
1,112,382	-		HMPREF1058_RS14755	0.30	-1.4
1,112,392	+		HMPREF1058_RS14755	0.31	-0.9
1,112,393	-		HMPREF1058_RS14755	0.31	-1.1
1,112,397	+		HMPREF1058_RS14755	0.32	-1.3
1,112,403	+		HMPREF1058_RS14755	0.32	-1.3
1,112,403	+		HMPREF1058_RS14755	0.32	-0.8
1,112,416	+		HMPREF1058_RS14755	0.33	-1.4
1,112,476	-		HMPREF1058_RS14755	0.38	+0.2
1,112,481	+		HMPREF1058_RS14755	0.39	-0.7
1,112,482	-		HMPREF1058_RS14755	0.39	+0.3
1,112,499	+		HMPREF1058_RS14755	0.41	-1.1
1,112,500	-		HMPREF1058_RS14755	0.41	-0.2
1,112,513	+		HMPREF1058_RS14755	0.42	+1.4
1,112,563	+		HMPREF1058_RS14755	0.46	-0.7
1,112,563	+		HMPREF1058_RS14755	0.46	-0.3
1,112,569	-		HMPREF1058_RS14755	0.47	+1.4
1,112,619	-		HMPREF1058_RS14755	0.51	-0.8
1,112,619	-		HMPREF1058_RS14755	0.51	-1.5
1,112,701	+		HMPREF1058_RS14755	0.58	-1.7
1,112,701	+		HMPREF1058_RS14755	0.58	+0.4
1,112,702	-		HMPREF1058_RS14755	0.58	-1.0
1,112,702	-		HMPREF1058_RS14755	0.58	-4.5
1,112,730	+		HMPREF1058_RS14755	0.61	-0.8
1,112,769	+		HMPREF1058_RS14755	0.64	-1.1
1,112,770	-		HMPREF1058_RS14755	0.64	-3.4
1,112,770	-		HMPREF1058_RS14755	0.64	-2.3
1,112,770	-		HMPREF1058_RS14755	0.64	+0.0
1,112,874	+		HMPREF1058_RS14755	0.73	-1.0
1,112,941	-		HMPREF1058_RS14755	0.79	-0.8
1,112,941	-		HMPREF1058_RS14755	0.79	+0.2
1,112,944	+		HMPREF1058_RS14755	0.79	-1.0
1,112,977	-		HMPREF1058_RS14755	0.82	-1.0
1,112,992	+		HMPREF1058_RS14755	0.84	-1.2
1,113,036	-		HMPREF1058_RS14755	0.87	-0.7
1,113,047	+		HMPREF1058_RS14755	0.88	-1.1
1,113,075	-				-1.6
1,113,076	+				-1.6
1,113,093	+				-1.3
1,113,132	-				+0.4
1,113,180	-				-0.4
1,113,184	+				-0.3
1,113,233	-				-2.1
1,113,296	+				-1.1
1,113,430	+		HMPREF1058_RS14750	0.34	+0.4
1,113,431	-		HMPREF1058_RS14750	0.34	-0.9
1,113,431	-		HMPREF1058_RS14750	0.34	-0.4
1,113,431	-		HMPREF1058_RS14750	0.34	-1.7
1,113,503	-		HMPREF1058_RS14750	0.49	+0.5
1,113,545	-		HMPREF1058_RS14750	0.58	-2.2
1,113,630	+		HMPREF1058_RS14750	0.76	+0.5
1,113,663	+		HMPREF1058_RS14750	0.83	-0.7
1,113,691	+		HMPREF1058_RS14750	0.89	-0.4
1,113,822	-				-0.6
1,113,936	+		HMPREF1058_RS14745	0.17	-1.8
1,113,937	-		HMPREF1058_RS14745	0.17	-1.7
1,113,940	+		HMPREF1058_RS14745	0.18	+0.4
1,113,941	-		HMPREF1058_RS14745	0.18	-0.6
1,114,027	+		HMPREF1058_RS14745	0.25	-1.6
1,114,027	+		HMPREF1058_RS14745	0.25	-1.2
1,114,104	+		HMPREF1058_RS14745	0.32	-1.7
1,114,104	+		HMPREF1058_RS14745	0.32	-0.2
1,114,157	+		HMPREF1058_RS14745	0.37	-0.6
1,114,294	+		HMPREF1058_RS14745	0.49	-1.8
1,114,295	-		HMPREF1058_RS14745	0.49	-0.8
1,114,339	+		HMPREF1058_RS14745	0.53	-1.1
1,114,404	+		HMPREF1058_RS14745	0.59	-0.7
1,114,540	+		HMPREF1058_RS14745	0.71	-0.6
1,114,541	-		HMPREF1058_RS14745	0.71	-0.8
1,114,636	+		HMPREF1058_RS14745	0.79	-1.4
1,114,636	+		HMPREF1058_RS14745	0.79	+1.4
1,114,660	+		HMPREF1058_RS14745	0.81	-1.8
1,114,662	+		HMPREF1058_RS14745	0.82	-1.0
1,114,682	-		HMPREF1058_RS14745	0.83	-3.3