Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS12520

Experiment: Mucin from porcine stomach type II 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mucin from porcine stomach type II 2.5 mg/ml (C)
85,559	-		HMPREF1058_RS12525	0.46	-0.7
85,626	-				+1.9
86,060	-		HMPREF1058_RS12525	0.76	+0.1
86,250	-		HMPREF1058_RS12525	0.87	-1.9
86,531	-				-0.3
86,542	-				-2.0
86,555	-				-0.2
86,585	-				-1.7
86,627	+				-2.2
86,630	-				-1.7
86,630	-				-2.2
86,643	+				-0.4
86,644	-				-1.8
86,688	+				-1.5
86,688	+				-1.2
86,716	+		HMPREF1058_RS12520	0.10	+1.3
86,717	-				-0.1
86,727	+		HMPREF1058_RS12520	0.11	-1.0
86,727	+		HMPREF1058_RS12520	0.11	+0.9
86,727	+		HMPREF1058_RS12520	0.11	-1.3
86,728	-		HMPREF1058_RS12520	0.11	-1.6
86,743	-		HMPREF1058_RS12520	0.12	-0.9
86,768	+		HMPREF1058_RS12520	0.13	-0.7
86,768	+		HMPREF1058_RS12520	0.13	-1.1
86,768	+		HMPREF1058_RS12520	0.13	-1.2
86,768	+		HMPREF1058_RS12520	0.13	-0.7
86,769	-		HMPREF1058_RS12520	0.13	-1.2
86,769	-		HMPREF1058_RS12520	0.13	+0.1
86,769	-				-0.9
86,814	+		HMPREF1058_RS12520	0.16	-1.6
86,814	+		HMPREF1058_RS12520	0.16	-1.5
86,814	+		HMPREF1058_RS12520	0.16	-1.4
86,864	+		HMPREF1058_RS12520	0.19	-1.5
86,917	+		HMPREF1058_RS12520	0.22	-1.5
86,918	-		HMPREF1058_RS12520	0.22	+0.3
87,056	+		HMPREF1058_RS12520	0.30	-0.7
87,065	+		HMPREF1058_RS12520	0.31	-2.4
87,066	-		HMPREF1058_RS12520	0.31	-0.8
87,066	-		HMPREF1058_RS12520	0.31	-1.3
87,068	+		HMPREF1058_RS12520	0.31	-1.8
87,070	+		HMPREF1058_RS12520	0.31	-1.5
87,092	+		HMPREF1058_RS12520	0.33	-1.8
87,124	+				-1.1
87,148	+		HMPREF1058_RS12520	0.36	-0.1
87,149	-		HMPREF1058_RS12520	0.36	+2.3
87,156	-		HMPREF1058_RS12520	0.36	-0.7
87,433	+		HMPREF1058_RS12520	0.53	-1.6
87,581	+		HMPREF1058_RS12520	0.62	-0.8
87,599	+		HMPREF1058_RS12520	0.63	-1.2
87,599	+		HMPREF1058_RS12520	0.63	-2.4
87,599	+		HMPREF1058_RS12520	0.63	-1.2
87,667	-		HMPREF1058_RS12520	0.67	-0.8
87,718	+		HMPREF1058_RS12520	0.70	-0.8
87,766	+		HMPREF1058_RS12520	0.73	-1.0
87,767	-		HMPREF1058_RS12520	0.73	-0.8
87,802	+		HMPREF1058_RS12520	0.75	-1.5
87,808	+		HMPREF1058_RS12520	0.75	-1.5
87,814	-		HMPREF1058_RS12520	0.76	-0.4
87,814	-		HMPREF1058_RS12520	0.76	-2.1
87,814	-		HMPREF1058_RS12520	0.76	-1.3
87,815	+		HMPREF1058_RS12520	0.76	-2.2
87,815	+		HMPREF1058_RS12520	0.76	-1.5
87,816	-		HMPREF1058_RS12520	0.76	-1.0
87,854	-		HMPREF1058_RS12520	0.78	-0.7
87,920	+		HMPREF1058_RS12520	0.82	-0.4
88,055	+				-1.7
88,066	+				-1.1
88,149	+				-1.0
88,156	+				-0.5
88,156	+				-0.7
88,238	-				+0.0
88,269	-				-0.2
88,281	+				-0.2
88,293	-				+0.2
88,400	-				-0.1
88,400	-				+0.9
88,405	-				-0.4
88,405	-				+0.6
88,425	+				+0.6
88,425	+				-0.5
88,437	+				-0.9
88,437	+				+0.3
88,437	+				-0.3
88,437	+				-0.3
88,438	-				-0.8
88,438	-				-0.8
88,443	-				+0.0
88,466	-				-0.2
88,473	-				-0.7
88,557	-				+0.3
88,558	+				-0.1
88,559	-				+0.2
88,559	-				+0.4
88,610	-				+0.6
88,649	-				-0.1
88,714	+				-1.1
88,715	-				-0.8
88,755	-				-0.2
88,757	-				-0.8
88,759	-				-0.8
88,759	-				-0.4
88,762	+				-0.5
88,762	+				-0.5
88,762	+				+0.1
88,762	+				-1.0
88,763	-				-0.4
88,763	-				-2.3
88,763	-				-1.0
88,908	-		HMPREF1058_RS12515	0.16	+0.3
88,909	+		HMPREF1058_RS12515	0.16	+0.5
88,909	+		HMPREF1058_RS12515	0.16	-0.8
88,909	+		HMPREF1058_RS12515	0.16	-0.3
88,909	+		HMPREF1058_RS12515	0.16	-0.3
88,910	-		HMPREF1058_RS12515	0.16	+0.1
89,055	-		HMPREF1058_RS12515	0.22	+0.8
89,077	-		HMPREF1058_RS12515	0.23	-0.3
89,109	-		HMPREF1058_RS12515	0.24	+0.0