Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS11910

Experiment: Mucin from porcine stomach type II 2.5 mg/ml (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS11920 and HMPREF1058_RS11915 are separated by 271 nucleotidesHMPREF1058_RS11915 and HMPREF1058_RS11910 are separated by 261 nucleotidesHMPREF1058_RS11910 and HMPREF1058_RS11905 are separated by 320 nucleotides HMPREF1058_RS11920: HMPREF1058_RS11920 - DUF2975 domain-containing protein, at 243,818 to 244,465 _RS11920 HMPREF1058_RS11915: HMPREF1058_RS11915 - helix-turn-helix transcriptional regulator, at 244,737 to 244,949 _RS11915 HMPREF1058_RS11910: HMPREF1058_RS11910 - DEAD/DEAH box helicase, at 245,211 to 247,085 _RS11910 HMPREF1058_RS11905: HMPREF1058_RS11905 - S46 family peptidase, at 247,406 to 249,532 _RS11905 Position (kb) 245 246 247 248Strain fitness (log2 ratio) -2 -1 0 1 2 3at 244.215 kb on + strand, within HMPREF1058_RS11920at 244.220 kb on - strand, within HMPREF1058_RS11920at 244.220 kb on - strand, within HMPREF1058_RS11920at 244.257 kb on - strand, within HMPREF1058_RS11920at 244.257 kb on - strand, within HMPREF1058_RS11920at 244.257 kb on - strand, within HMPREF1058_RS11920at 244.285 kb on - strandat 244.358 kb on + strand, within HMPREF1058_RS11920at 244.359 kb on - strand, within HMPREF1058_RS11920at 244.544 kb on + strandat 244.556 kb on - strandat 244.569 kb on + strandat 244.607 kb on - strandat 244.651 kb on - strandat 244.661 kb on + strandat 244.661 kb on + strandat 244.746 kb on - strandat 244.762 kb on + strand, within HMPREF1058_RS11915at 244.901 kb on - strand, within HMPREF1058_RS11915at 244.950 kb on + strandat 244.950 kb on + strandat 244.966 kb on + strandat 244.966 kb on + strandat 244.966 kb on + strandat 244.966 kb on + strandat 244.967 kb on - strandat 244.967 kb on - strandat 244.967 kb on - strandat 244.996 kb on + strandat 245.042 kb on + strandat 245.064 kb on + strandat 245.067 kb on - strandat 245.121 kb on + strandat 245.159 kb on - strandat 245.159 kb on - strandat 245.161 kb on - strandat 245.252 kb on - strandat 245.275 kb on - strandat 245.305 kb on + strandat 245.314 kb on - strandat 245.338 kb on + strandat 245.500 kb on - strand, within HMPREF1058_RS11910at 245.528 kb on - strand, within HMPREF1058_RS11910at 245.557 kb on + strand, within HMPREF1058_RS11910at 245.579 kb on - strand, within HMPREF1058_RS11910at 245.579 kb on - strand, within HMPREF1058_RS11910at 245.583 kb on - strand, within HMPREF1058_RS11910at 245.620 kb on + strand, within HMPREF1058_RS11910at 245.621 kb on - strandat 245.651 kb on + strand, within HMPREF1058_RS11910at 245.663 kb on - strand, within HMPREF1058_RS11910at 245.710 kb on + strand, within HMPREF1058_RS11910at 245.875 kb on - strand, within HMPREF1058_RS11910at 245.898 kb on + strand, within HMPREF1058_RS11910at 246.009 kb on + strand, within HMPREF1058_RS11910at 246.009 kb on + strand, within HMPREF1058_RS11910at 246.058 kb on + strand, within HMPREF1058_RS11910at 246.059 kb on - strand, within HMPREF1058_RS11910at 246.178 kb on + strand, within HMPREF1058_RS11910at 246.178 kb on + strand, within HMPREF1058_RS11910at 246.178 kb on + strand, within HMPREF1058_RS11910at 246.186 kb on + strand, within HMPREF1058_RS11910at 246.186 kb on + strandat 246.236 kb on + strand, within HMPREF1058_RS11910at 246.416 kb on - strand, within HMPREF1058_RS11910at 246.507 kb on + strand, within HMPREF1058_RS11910at 246.507 kb on + strand, within HMPREF1058_RS11910at 246.507 kb on + strand, within HMPREF1058_RS11910at 246.507 kb on + strand, within HMPREF1058_RS11910at 246.509 kb on + strand, within HMPREF1058_RS11910at 246.509 kb on + strand, within HMPREF1058_RS11910at 246.510 kb on - strand, within HMPREF1058_RS11910at 246.512 kb on + strand, within HMPREF1058_RS11910at 246.722 kb on + strand, within HMPREF1058_RS11910at 246.725 kb on + strand, within HMPREF1058_RS11910at 246.725 kb on + strand, within HMPREF1058_RS11910at 246.772 kb on + strand, within HMPREF1058_RS11910at 247.061 kb on + strandat 247.118 kb on - strandat 247.120 kb on + strandat 247.120 kb on + strandat 247.126 kb on + strandat 247.126 kb on + strandat 247.154 kb on + strandat 247.211 kb on - strandat 247.233 kb on + strandat 247.234 kb on - strandat 247.235 kb on + strandat 247.304 kb on + strandat 247.308 kb on - strandat 247.310 kb on + strandat 247.407 kb on + strandat 247.408 kb on - strandat 247.467 kb on + strandat 247.476 kb on + strandat 247.476 kb on + strandat 247.477 kb on - strandat 247.525 kb on + strandat 247.525 kb on + strandat 247.526 kb on - strandat 247.569 kb on - strandat 247.571 kb on + strandat 247.572 kb on - strandat 247.621 kb on + strand, within HMPREF1058_RS11905at 247.637 kb on - strand, within HMPREF1058_RS11905at 247.652 kb on - strand, within HMPREF1058_RS11905at 247.652 kb on - strandat 247.672 kb on - strand, within HMPREF1058_RS11905at 247.742 kb on - strand, within HMPREF1058_RS11905at 247.816 kb on - strand, within HMPREF1058_RS11905at 247.849 kb on + strand, within HMPREF1058_RS11905at 247.855 kb on + strand, within HMPREF1058_RS11905at 247.855 kb on + strand, within HMPREF1058_RS11905at 247.866 kb on + strand, within HMPREF1058_RS11905at 247.877 kb on - strand, within HMPREF1058_RS11905at 247.877 kb on - strandat 247.940 kb on - strand, within HMPREF1058_RS11905at 247.991 kb on - strand, within HMPREF1058_RS11905at 248.025 kb on + strand, within HMPREF1058_RS11905at 248.025 kb on + strand, within HMPREF1058_RS11905at 248.025 kb on + strand, within HMPREF1058_RS11905at 248.026 kb on - strand, within HMPREF1058_RS11905at 248.026 kb on - strand, within HMPREF1058_RS11905at 248.026 kb on - strand, within HMPREF1058_RS11905at 248.029 kb on + strand, within HMPREF1058_RS11905

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Per-strain Table

Position Strand Gene LocusTag Fraction Mucin from porcine stomach type II 2.5 mg/ml (C)
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244,215 + HMPREF1058_RS11920 0.61 +0.2
244,220 - HMPREF1058_RS11920 0.62 -0.5
244,220 - HMPREF1058_RS11920 0.62 +1.5
244,257 - HMPREF1058_RS11920 0.68 +0.9
244,257 - HMPREF1058_RS11920 0.68 -0.4
244,257 - HMPREF1058_RS11920 0.68 +0.8
244,285 - +0.9
244,358 + HMPREF1058_RS11920 0.83 +0.7
244,359 - HMPREF1058_RS11920 0.83 +0.2
244,544 + -0.3
244,556 - +0.1
244,569 + +0.4
244,607 - +0.7
244,651 - -1.0
244,661 + -0.1
244,661 + -0.1
244,746 - -0.1
244,762 + HMPREF1058_RS11915 0.12 +0.3
244,901 - HMPREF1058_RS11915 0.77 -0.5
244,950 + +0.0
244,950 + -0.2
244,966 + -0.4
244,966 + +1.1
244,966 + +0.1
244,966 + +0.3
244,967 - -0.3
244,967 - -0.4
244,967 - -0.3
244,996 + -1.1
245,042 + -0.2
245,064 + -1.4
245,067 - +0.3
245,121 + -0.3
245,159 - -0.9
245,159 - +1.9
245,161 - -1.7
245,252 - -1.6
245,275 - -2.0
245,305 + -1.4
245,314 - -0.8
245,338 + -0.5
245,500 - HMPREF1058_RS11910 0.15 -1.3
245,528 - HMPREF1058_RS11910 0.17 +0.2
245,557 + HMPREF1058_RS11910 0.18 -0.1
245,579 - HMPREF1058_RS11910 0.20 -1.1
245,579 - HMPREF1058_RS11910 0.20 +1.9
245,583 - HMPREF1058_RS11910 0.20 +1.3
245,620 + HMPREF1058_RS11910 0.22 -0.7
245,621 - +1.2
245,651 + HMPREF1058_RS11910 0.23 -0.5
245,663 - HMPREF1058_RS11910 0.24 -2.1
245,710 + HMPREF1058_RS11910 0.27 -1.1
245,875 - HMPREF1058_RS11910 0.35 -1.3
245,898 + HMPREF1058_RS11910 0.37 +1.1
246,009 + HMPREF1058_RS11910 0.43 -0.1
246,009 + HMPREF1058_RS11910 0.43 -1.4
246,058 + HMPREF1058_RS11910 0.45 -2.1
246,059 - HMPREF1058_RS11910 0.45 -0.7
246,178 + HMPREF1058_RS11910 0.52 +1.9
246,178 + HMPREF1058_RS11910 0.52 +0.1
246,178 + HMPREF1058_RS11910 0.52 -1.4
246,186 + HMPREF1058_RS11910 0.52 -1.3
246,186 + -1.3
246,236 + HMPREF1058_RS11910 0.55 -0.7
246,416 - HMPREF1058_RS11910 0.64 -0.9
246,507 + HMPREF1058_RS11910 0.69 -0.2
246,507 + HMPREF1058_RS11910 0.69 -0.2
246,507 + HMPREF1058_RS11910 0.69 -2.1
246,507 + HMPREF1058_RS11910 0.69 -2.1
246,509 + HMPREF1058_RS11910 0.69 -1.7
246,509 + HMPREF1058_RS11910 0.69 +0.3
246,510 - HMPREF1058_RS11910 0.69 +0.9
246,512 + HMPREF1058_RS11910 0.69 -1.1
246,722 + HMPREF1058_RS11910 0.81 -1.6
246,725 + HMPREF1058_RS11910 0.81 -0.2
246,725 + HMPREF1058_RS11910 0.81 -1.5
246,772 + HMPREF1058_RS11910 0.83 -0.8
247,061 + -0.8
247,118 - +0.1
247,120 + -0.0
247,120 + -1.1
247,126 + +0.5
247,126 + -0.8
247,154 + +0.3
247,211 - -0.0
247,233 + -1.3
247,234 - -0.3
247,235 + +0.5
247,304 + -0.8
247,308 - +0.4
247,310 + +1.3
247,407 + -0.5
247,408 - +0.1
247,467 + +1.1
247,476 + -0.4
247,476 + -0.0
247,477 - -1.7
247,525 + +0.5
247,525 + +0.1
247,526 - -0.5
247,569 - +0.4
247,571 + -0.8
247,572 - +0.0
247,621 + HMPREF1058_RS11905 0.10 +1.2
247,637 - HMPREF1058_RS11905 0.11 -0.6
247,652 - HMPREF1058_RS11905 0.12 +0.0
247,652 - -0.3
247,672 - HMPREF1058_RS11905 0.13 -2.4
247,742 - HMPREF1058_RS11905 0.16 -0.5
247,816 - HMPREF1058_RS11905 0.19 +0.0
247,849 + HMPREF1058_RS11905 0.21 +0.2
247,855 + HMPREF1058_RS11905 0.21 -1.3
247,855 + HMPREF1058_RS11905 0.21 -0.3
247,866 + HMPREF1058_RS11905 0.22 +0.9
247,877 - HMPREF1058_RS11905 0.22 -1.0
247,877 - +1.1
247,940 - HMPREF1058_RS11905 0.25 -0.4
247,991 - HMPREF1058_RS11905 0.28 -0.5
248,025 + HMPREF1058_RS11905 0.29 +2.9
248,025 + HMPREF1058_RS11905 0.29 +0.6
248,025 + HMPREF1058_RS11905 0.29 +0.5
248,026 - HMPREF1058_RS11905 0.29 -0.5
248,026 - HMPREF1058_RS11905 0.29 -0.7
248,026 - HMPREF1058_RS11905 0.29 -0.7
248,029 + HMPREF1058_RS11905 0.29 -0.7

Or see this region's nucleotide sequence