Experiment: Mucin from porcine stomach type II 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS11280 and HMPREF1058_RS11275 are separated by 337 nucleotides HMPREF1058_RS11275 and HMPREF1058_RS11270 are separated by 37 nucleotides
HMPREF1058_RS11280: HMPREF1058_RS11280 - tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB, at 409,043 to 410,413
_RS11280
HMPREF1058_RS11275: HMPREF1058_RS11275 - hypothetical protein, at 410,751 to 411,101
_RS11275
HMPREF1058_RS11270: HMPREF1058_RS11270 - acetyl-CoA hydrolase/transferase family protein, at 411,139 to 412,632
_RS11270
Position (kb) 410
411
412 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 409.782 kb on - strand, within HMPREF1058_RS11280 at 409.789 kb on + strand, within HMPREF1058_RS11280 at 409.790 kb on - strand, within HMPREF1058_RS11280 at 409.790 kb on - strand, within HMPREF1058_RS11280 at 409.828 kb on + strand, within HMPREF1058_RS11280 at 409.867 kb on - strand, within HMPREF1058_RS11280 at 409.959 kb on - strand, within HMPREF1058_RS11280 at 409.996 kb on + strand, within HMPREF1058_RS11280 at 409.996 kb on + strand, within HMPREF1058_RS11280 at 410.049 kb on + strand, within HMPREF1058_RS11280 at 410.049 kb on + strand, within HMPREF1058_RS11280 at 410.063 kb on + strand, within HMPREF1058_RS11280 at 410.106 kb on - strand, within HMPREF1058_RS11280 at 410.167 kb on + strand, within HMPREF1058_RS11280 at 410.167 kb on + strand, within HMPREF1058_RS11280 at 410.167 kb on + strand, within HMPREF1058_RS11280 at 410.168 kb on - strand, within HMPREF1058_RS11280 at 410.241 kb on - strand, within HMPREF1058_RS11280 at 410.270 kb on + strand, within HMPREF1058_RS11280 at 410.270 kb on + strand, within HMPREF1058_RS11280 at 410.414 kb on - strand at 410.427 kb on + strand at 410.571 kb on + strand at 410.574 kb on + strand at 410.574 kb on + strand at 410.579 kb on + strand at 410.588 kb on + strand at 410.690 kb on + strand at 410.690 kb on + strand at 410.691 kb on - strand at 410.699 kb on - strand at 410.734 kb on + strand at 410.735 kb on - strand at 410.735 kb on - strand at 410.769 kb on - strand at 410.774 kb on - strand at 410.779 kb on + strand at 410.782 kb on + strand at 410.867 kb on + strand, within HMPREF1058_RS11275 at 410.868 kb on - strand, within HMPREF1058_RS11275 at 410.882 kb on - strand, within HMPREF1058_RS11275 at 410.896 kb on + strand, within HMPREF1058_RS11275 at 410.896 kb on + strand, within HMPREF1058_RS11275 at 411.030 kb on - strand, within HMPREF1058_RS11275 at 411.031 kb on + strand, within HMPREF1058_RS11275 at 411.031 kb on + strand, within HMPREF1058_RS11275 at 411.114 kb on + strand at 411.115 kb on - strand at 411.118 kb on - strand at 411.136 kb on - strand at 411.148 kb on - strand at 411.193 kb on + strand at 411.304 kb on - strand, within HMPREF1058_RS11270 at 411.306 kb on + strand, within HMPREF1058_RS11270 at 411.306 kb on + strand, within HMPREF1058_RS11270 at 411.306 kb on + strand, within HMPREF1058_RS11270 at 411.325 kb on - strand, within HMPREF1058_RS11270 at 411.337 kb on - strand, within HMPREF1058_RS11270 at 411.351 kb on - strand, within HMPREF1058_RS11270 at 411.436 kb on + strand, within HMPREF1058_RS11270 at 411.437 kb on - strand, within HMPREF1058_RS11270 at 411.474 kb on - strand, within HMPREF1058_RS11270 at 411.580 kb on - strand, within HMPREF1058_RS11270 at 411.734 kb on + strand, within HMPREF1058_RS11270 at 411.740 kb on + strand, within HMPREF1058_RS11270 at 411.741 kb on - strand, within HMPREF1058_RS11270 at 411.879 kb on + strand, within HMPREF1058_RS11270 at 411.880 kb on - strand, within HMPREF1058_RS11270 at 411.880 kb on - strand, within HMPREF1058_RS11270 at 411.982 kb on + strand, within HMPREF1058_RS11270 at 411.983 kb on - strand, within HMPREF1058_RS11270 at 412.047 kb on + strand, within HMPREF1058_RS11270 at 412.048 kb on - strand, within HMPREF1058_RS11270 at 412.048 kb on - strand, within HMPREF1058_RS11270 at 412.048 kb on - strand, within HMPREF1058_RS11270 at 412.091 kb on - strand, within HMPREF1058_RS11270
Per-strain Table
Position Strand Gene LocusTag Fraction Mucin from porcine stomach type II 2.5 mg/ml (C) remove 409,782 - HMPREF1058_RS11280 0.54 +1.5 409,789 + HMPREF1058_RS11280 0.54 -0.7 409,790 - HMPREF1058_RS11280 0.54 +0.1 409,790 - HMPREF1058_RS11280 0.54 +0.3 409,828 + HMPREF1058_RS11280 0.57 -1.0 409,867 - HMPREF1058_RS11280 0.60 -0.4 409,959 - HMPREF1058_RS11280 0.67 -0.5 409,996 + HMPREF1058_RS11280 0.70 -0.3 409,996 + HMPREF1058_RS11280 0.70 -0.4 410,049 + HMPREF1058_RS11280 0.73 -0.5 410,049 + HMPREF1058_RS11280 0.73 -0.4 410,063 + HMPREF1058_RS11280 0.74 -0.6 410,106 - HMPREF1058_RS11280 0.78 -0.8 410,167 + HMPREF1058_RS11280 0.82 -1.5 410,167 + HMPREF1058_RS11280 0.82 -0.8 410,167 + HMPREF1058_RS11280 0.82 +0.0 410,168 - HMPREF1058_RS11280 0.82 -0.4 410,241 - HMPREF1058_RS11280 0.87 -0.3 410,270 + HMPREF1058_RS11280 0.89 -0.9 410,270 + HMPREF1058_RS11280 0.89 -1.0 410,414 - +0.3 410,427 + -0.1 410,571 + +0.9 410,574 + -0.2 410,574 + +0.1 410,579 + -0.0 410,588 + +2.9 410,690 + -0.6 410,690 + +1.0 410,691 - -1.0 410,699 - +0.6 410,734 + +0.2 410,735 - +0.3 410,735 - -2.7 410,769 - -0.7 410,774 - -0.1 410,779 + -0.2 410,782 + -2.3 410,867 + HMPREF1058_RS11275 0.33 +0.0 410,868 - HMPREF1058_RS11275 0.33 -1.9 410,882 - HMPREF1058_RS11275 0.37 -2.4 410,896 + HMPREF1058_RS11275 0.41 -0.3 410,896 + HMPREF1058_RS11275 0.41 -0.9 411,030 - HMPREF1058_RS11275 0.79 -2.1 411,031 + HMPREF1058_RS11275 0.80 -0.4 411,031 + HMPREF1058_RS11275 0.80 +0.0 411,114 + +0.1 411,115 - -1.7 411,118 - -1.2 411,136 - -2.9 411,148 - -4.2 411,193 + -2.2 411,304 - HMPREF1058_RS11270 0.11 -1.6 411,306 + HMPREF1058_RS11270 0.11 -2.0 411,306 + HMPREF1058_RS11270 0.11 -1.8 411,306 + HMPREF1058_RS11270 0.11 -0.2 411,325 - HMPREF1058_RS11270 0.12 -2.3 411,337 - HMPREF1058_RS11270 0.13 -2.4 411,351 - HMPREF1058_RS11270 0.14 -2.4 411,436 + HMPREF1058_RS11270 0.20 -2.6 411,437 - HMPREF1058_RS11270 0.20 -0.4 411,474 - HMPREF1058_RS11270 0.22 -1.4 411,580 - HMPREF1058_RS11270 0.30 -2.4 411,734 + HMPREF1058_RS11270 0.40 -1.3 411,740 + HMPREF1058_RS11270 0.40 -1.1 411,741 - HMPREF1058_RS11270 0.40 -1.8 411,879 + HMPREF1058_RS11270 0.50 -3.0 411,880 - HMPREF1058_RS11270 0.50 -1.2 411,880 - HMPREF1058_RS11270 0.50 -1.7 411,982 + HMPREF1058_RS11270 0.56 -1.0 411,983 - HMPREF1058_RS11270 0.56 -2.4 412,047 + HMPREF1058_RS11270 0.61 -3.8 412,048 - HMPREF1058_RS11270 0.61 -0.9 412,048 - HMPREF1058_RS11270 0.61 -0.9 412,048 - HMPREF1058_RS11270 0.61 -1.2 412,091 - HMPREF1058_RS11270 0.64 -1.1
Or see this region's nucleotide sequence