Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS10970

Experiment: Mucin from porcine stomach type II 2.5 mg/ml (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS10975 and HMPREF1058_RS10970 are separated by 300 nucleotidesHMPREF1058_RS10970 and HMPREF1058_RS10965 are separated by 91 nucleotides HMPREF1058_RS10975: HMPREF1058_RS10975 - serine acetyltransferase, at 511,916 to 512,824 _RS10975 HMPREF1058_RS10970: HMPREF1058_RS10970 - ribonuclease R, at 513,125 to 515,272 _RS10970 HMPREF1058_RS10965: HMPREF1058_RS10965 - cation transporter, at 515,364 to 516,305 _RS10965 Position (kb) 513 514 515 516Strain fitness (log2 ratio) -2 -1 0 1 2at 512.192 kb on + strand, within HMPREF1058_RS10975at 512.228 kb on + strand, within HMPREF1058_RS10975at 512.412 kb on + strand, within HMPREF1058_RS10975at 512.413 kb on - strand, within HMPREF1058_RS10975at 512.423 kb on + strand, within HMPREF1058_RS10975at 512.597 kb on + strand, within HMPREF1058_RS10975at 512.616 kb on + strand, within HMPREF1058_RS10975at 512.616 kb on + strand, within HMPREF1058_RS10975at 512.688 kb on - strand, within HMPREF1058_RS10975at 513.070 kb on + strandat 513.071 kb on - strandat 513.243 kb on + strandat 513.268 kb on - strandat 513.331 kb on - strandat 513.331 kb on - strandat 513.464 kb on - strand, within HMPREF1058_RS10970at 513.575 kb on - strand, within HMPREF1058_RS10970at 513.586 kb on - strand, within HMPREF1058_RS10970at 513.589 kb on - strand, within HMPREF1058_RS10970at 513.619 kb on + strand, within HMPREF1058_RS10970at 513.619 kb on + strand, within HMPREF1058_RS10970at 513.619 kb on + strand, within HMPREF1058_RS10970at 513.619 kb on + strand, within HMPREF1058_RS10970at 513.620 kb on - strand, within HMPREF1058_RS10970at 513.695 kb on + strand, within HMPREF1058_RS10970at 513.696 kb on - strand, within HMPREF1058_RS10970at 513.751 kb on + strand, within HMPREF1058_RS10970at 513.751 kb on + strand, within HMPREF1058_RS10970at 513.752 kb on - strand, within HMPREF1058_RS10970at 513.752 kb on - strand, within HMPREF1058_RS10970at 513.752 kb on - strand, within HMPREF1058_RS10970at 513.755 kb on + strand, within HMPREF1058_RS10970at 513.755 kb on + strand, within HMPREF1058_RS10970at 513.756 kb on - strand, within HMPREF1058_RS10970at 513.761 kb on - strand, within HMPREF1058_RS10970at 513.761 kb on - strand, within HMPREF1058_RS10970at 513.863 kb on + strand, within HMPREF1058_RS10970at 513.907 kb on + strand, within HMPREF1058_RS10970at 514.261 kb on + strand, within HMPREF1058_RS10970at 514.262 kb on - strand, within HMPREF1058_RS10970at 514.291 kb on + strand, within HMPREF1058_RS10970at 514.299 kb on - strand, within HMPREF1058_RS10970at 514.305 kb on + strandat 514.391 kb on + strand, within HMPREF1058_RS10970at 514.401 kb on - strand, within HMPREF1058_RS10970at 514.568 kb on + strand, within HMPREF1058_RS10970at 514.568 kb on + strand, within HMPREF1058_RS10970at 514.568 kb on + strand, within HMPREF1058_RS10970at 514.569 kb on - strand, within HMPREF1058_RS10970at 514.569 kb on - strand, within HMPREF1058_RS10970at 514.569 kb on - strand, within HMPREF1058_RS10970at 514.572 kb on + strand, within HMPREF1058_RS10970at 514.572 kb on + strand, within HMPREF1058_RS10970at 514.573 kb on - strand, within HMPREF1058_RS10970at 514.732 kb on + strand, within HMPREF1058_RS10970at 514.751 kb on - strand, within HMPREF1058_RS10970at 514.826 kb on - strand, within HMPREF1058_RS10970at 514.826 kb on - strand, within HMPREF1058_RS10970at 514.905 kb on - strand, within HMPREF1058_RS10970at 514.955 kb on - strand, within HMPREF1058_RS10970at 515.003 kb on - strand, within HMPREF1058_RS10970at 515.122 kb on + strandat 515.123 kb on - strandat 515.134 kb on + strandat 515.134 kb on + strandat 515.135 kb on - strandat 515.138 kb on - strandat 515.283 kb on - strandat 515.283 kb on - strandat 515.283 kb on - strandat 515.283 kb on - strandat 515.287 kb on - strandat 515.293 kb on + strandat 515.293 kb on + strandat 515.294 kb on - strandat 515.337 kb on - strandat 515.340 kb on + strandat 515.341 kb on - strandat 515.390 kb on + strandat 515.450 kb on + strandat 515.450 kb on + strandat 515.597 kb on + strand, within HMPREF1058_RS10965at 515.597 kb on + strand, within HMPREF1058_RS10965at 515.597 kb on + strand, within HMPREF1058_RS10965at 515.675 kb on + strand, within HMPREF1058_RS10965at 515.828 kb on + strand, within HMPREF1058_RS10965at 516.088 kb on + strand, within HMPREF1058_RS10965at 516.088 kb on + strand, within HMPREF1058_RS10965at 516.167 kb on + strand, within HMPREF1058_RS10965at 516.167 kb on + strand, within HMPREF1058_RS10965at 516.169 kb on + strand, within HMPREF1058_RS10965at 516.169 kb on + strand, within HMPREF1058_RS10965at 516.179 kb on + strand, within HMPREF1058_RS10965at 516.181 kb on + strand, within HMPREF1058_RS10965at 516.209 kb on + strand, within HMPREF1058_RS10965at 516.242 kb on + strandat 516.242 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Mucin from porcine stomach type II 2.5 mg/ml (C)
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512,192 + HMPREF1058_RS10975 0.30 -0.1
512,228 + HMPREF1058_RS10975 0.34 +0.9
512,412 + HMPREF1058_RS10975 0.55 +1.3
512,413 - HMPREF1058_RS10975 0.55 -0.2
512,423 + HMPREF1058_RS10975 0.56 +0.4
512,597 + HMPREF1058_RS10975 0.75 -1.1
512,616 + HMPREF1058_RS10975 0.77 +0.6
512,616 + HMPREF1058_RS10975 0.77 +0.0
512,688 - HMPREF1058_RS10975 0.85 -1.7
513,070 + -0.7
513,071 - -0.2
513,243 + -1.9
513,268 - -0.4
513,331 - -2.2
513,331 - -0.6
513,464 - HMPREF1058_RS10970 0.16 +0.8
513,575 - HMPREF1058_RS10970 0.21 -0.2
513,586 - HMPREF1058_RS10970 0.21 -1.2
513,589 - HMPREF1058_RS10970 0.22 -1.9
513,619 + HMPREF1058_RS10970 0.23 -1.3
513,619 + HMPREF1058_RS10970 0.23 +1.9
513,619 + HMPREF1058_RS10970 0.23 +0.9
513,619 + HMPREF1058_RS10970 0.23 +0.7
513,620 - HMPREF1058_RS10970 0.23 -1.8
513,695 + HMPREF1058_RS10970 0.27 -0.3
513,696 - HMPREF1058_RS10970 0.27 -1.0
513,751 + HMPREF1058_RS10970 0.29 -1.3
513,751 + HMPREF1058_RS10970 0.29 -0.9
513,752 - HMPREF1058_RS10970 0.29 -0.5
513,752 - HMPREF1058_RS10970 0.29 +0.7
513,752 - HMPREF1058_RS10970 0.29 +0.4
513,755 + HMPREF1058_RS10970 0.29 +0.4
513,755 + HMPREF1058_RS10970 0.29 -1.4
513,756 - HMPREF1058_RS10970 0.29 -1.3
513,761 - HMPREF1058_RS10970 0.30 +0.4
513,761 - HMPREF1058_RS10970 0.30 +1.9
513,863 + HMPREF1058_RS10970 0.34 -1.7
513,907 + HMPREF1058_RS10970 0.36 -0.2
514,261 + HMPREF1058_RS10970 0.53 -0.7
514,262 - HMPREF1058_RS10970 0.53 -0.1
514,291 + HMPREF1058_RS10970 0.54 -2.3
514,299 - HMPREF1058_RS10970 0.55 -1.4
514,305 + -0.4
514,391 + HMPREF1058_RS10970 0.59 -1.6
514,401 - HMPREF1058_RS10970 0.59 +2.6
514,568 + HMPREF1058_RS10970 0.67 -1.8
514,568 + HMPREF1058_RS10970 0.67 -2.1
514,568 + HMPREF1058_RS10970 0.67 -1.9
514,569 - HMPREF1058_RS10970 0.67 +1.1
514,569 - HMPREF1058_RS10970 0.67 -0.5
514,569 - HMPREF1058_RS10970 0.67 -0.9
514,572 + HMPREF1058_RS10970 0.67 +0.9
514,572 + HMPREF1058_RS10970 0.67 +0.0
514,573 - HMPREF1058_RS10970 0.67 -0.1
514,732 + HMPREF1058_RS10970 0.75 +0.3
514,751 - HMPREF1058_RS10970 0.76 +0.9
514,826 - HMPREF1058_RS10970 0.79 +0.7
514,826 - HMPREF1058_RS10970 0.79 -0.9
514,905 - HMPREF1058_RS10970 0.83 -0.8
514,955 - HMPREF1058_RS10970 0.85 -2.0
515,003 - HMPREF1058_RS10970 0.87 +0.0
515,122 + -0.4
515,123 - -0.6
515,134 + -1.3
515,134 + -0.1
515,135 - -0.3
515,138 - +0.3
515,283 - -0.7
515,283 - -1.0
515,283 - -0.5
515,283 - -1.0
515,287 - -0.4
515,293 + +1.2
515,293 + -0.8
515,294 - -0.2
515,337 - +0.9
515,340 + +0.0
515,341 - -2.6
515,390 + +0.3
515,450 + -0.5
515,450 + -0.4
515,597 + HMPREF1058_RS10965 0.25 -0.2
515,597 + HMPREF1058_RS10965 0.25 -1.2
515,597 + HMPREF1058_RS10965 0.25 -0.3
515,675 + HMPREF1058_RS10965 0.33 -1.3
515,828 + HMPREF1058_RS10965 0.49 +1.9
516,088 + HMPREF1058_RS10965 0.77 -2.3
516,088 + HMPREF1058_RS10965 0.77 +0.0
516,167 + HMPREF1058_RS10965 0.85 -0.1
516,167 + HMPREF1058_RS10965 0.85 -0.2
516,169 + HMPREF1058_RS10965 0.85 +0.1
516,169 + HMPREF1058_RS10965 0.85 +0.6
516,179 + HMPREF1058_RS10965 0.87 +0.6
516,181 + HMPREF1058_RS10965 0.87 -0.7
516,209 + HMPREF1058_RS10965 0.90 +0.1
516,242 + +1.1
516,242 + -0.4

Or see this region's nucleotide sequence