Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS10955

Experiment: Mucin from porcine stomach type II 2.5 mg/ml (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS10960 and HMPREF1058_RS10955 overlap by 10 nucleotidesHMPREF1058_RS10955 and HMPREF1058_RS10950 are separated by 176 nucleotides HMPREF1058_RS10960: HMPREF1058_RS10960 - NAD(P)-dependent oxidoreductase, at 516,316 to 517,362 _RS10960 HMPREF1058_RS10955: HMPREF1058_RS10955 - phosphatase PAP2 family protein, at 517,353 to 518,330 _RS10955 HMPREF1058_RS10950: HMPREF1058_RS10950 - DUF2807 domain-containing protein, at 518,507 to 519,358 _RS10950 Position (kb) 517 518 519Strain fitness (log2 ratio) -3 -2 -1 0 1at 517.341 kb on + strandat 517.341 kb on + strandat 517.341 kb on + strandat 517.360 kb on + strandat 517.415 kb on + strandat 517.423 kb on + strandat 517.424 kb on - strandat 517.425 kb on + strandat 517.425 kb on + strandat 517.425 kb on + strandat 517.425 kb on + strandat 517.426 kb on - strandat 517.426 kb on - strandat 517.426 kb on - strandat 517.428 kb on - strandat 517.488 kb on - strand, within HMPREF1058_RS10955at 517.534 kb on + strand, within HMPREF1058_RS10955at 517.608 kb on + strand, within HMPREF1058_RS10955at 517.754 kb on + strand, within HMPREF1058_RS10955at 517.755 kb on - strand, within HMPREF1058_RS10955at 517.880 kb on + strand, within HMPREF1058_RS10955at 517.881 kb on - strand, within HMPREF1058_RS10955at 517.886 kb on + strand, within HMPREF1058_RS10955at 517.886 kb on + strand, within HMPREF1058_RS10955at 517.888 kb on + strand, within HMPREF1058_RS10955at 517.988 kb on + strandat 518.105 kb on + strand, within HMPREF1058_RS10955at 518.106 kb on - strand, within HMPREF1058_RS10955at 518.106 kb on - strand, within HMPREF1058_RS10955at 518.126 kb on + strand, within HMPREF1058_RS10955at 518.152 kb on + strand, within HMPREF1058_RS10955at 518.153 kb on - strand, within HMPREF1058_RS10955at 518.157 kb on + strand, within HMPREF1058_RS10955at 518.175 kb on + strand, within HMPREF1058_RS10955at 518.179 kb on + strand, within HMPREF1058_RS10955at 518.186 kb on - strand, within HMPREF1058_RS10955at 518.186 kb on - strand, within HMPREF1058_RS10955at 518.186 kb on - strand, within HMPREF1058_RS10955at 518.202 kb on + strand, within HMPREF1058_RS10955at 518.217 kb on + strand, within HMPREF1058_RS10955at 518.262 kb on + strandat 518.263 kb on - strandat 518.263 kb on - strandat 518.263 kb on - strandat 518.273 kb on + strandat 518.273 kb on + strandat 518.277 kb on + strandat 518.277 kb on + strandat 518.277 kb on + strandat 518.277 kb on + strandat 518.279 kb on + strandat 518.279 kb on + strandat 518.280 kb on - strandat 518.280 kb on - strandat 518.283 kb on + strandat 518.305 kb on + strandat 518.346 kb on - strandat 518.346 kb on - strandat 518.504 kb on - strandat 518.518 kb on - strandat 518.546 kb on - strandat 518.580 kb on + strandat 518.590 kb on + strandat 518.591 kb on - strandat 518.597 kb on + strand, within HMPREF1058_RS10950at 518.598 kb on - strand, within HMPREF1058_RS10950at 518.598 kb on - strand, within HMPREF1058_RS10950at 518.624 kb on - strand, within HMPREF1058_RS10950at 518.636 kb on - strand, within HMPREF1058_RS10950at 518.661 kb on + strand, within HMPREF1058_RS10950at 518.661 kb on + strandat 518.700 kb on + strand, within HMPREF1058_RS10950at 518.701 kb on - strand, within HMPREF1058_RS10950at 518.702 kb on + strand, within HMPREF1058_RS10950at 518.703 kb on - strand, within HMPREF1058_RS10950at 518.726 kb on + strand, within HMPREF1058_RS10950at 518.726 kb on + strand, within HMPREF1058_RS10950at 518.726 kb on + strand, within HMPREF1058_RS10950at 518.728 kb on + strand, within HMPREF1058_RS10950at 518.755 kb on - strand, within HMPREF1058_RS10950at 518.796 kb on + strand, within HMPREF1058_RS10950at 518.809 kb on + strand, within HMPREF1058_RS10950at 518.809 kb on + strand, within HMPREF1058_RS10950at 518.875 kb on + strand, within HMPREF1058_RS10950at 518.876 kb on - strand, within HMPREF1058_RS10950at 518.880 kb on + strand, within HMPREF1058_RS10950at 518.911 kb on + strand, within HMPREF1058_RS10950at 518.941 kb on - strand, within HMPREF1058_RS10950at 518.987 kb on - strand, within HMPREF1058_RS10950at 519.060 kb on + strand, within HMPREF1058_RS10950at 519.091 kb on - strand, within HMPREF1058_RS10950at 519.134 kb on - strand, within HMPREF1058_RS10950at 519.191 kb on - strand, within HMPREF1058_RS10950at 519.191 kb on - strand, within HMPREF1058_RS10950at 519.208 kb on - strand, within HMPREF1058_RS10950at 519.208 kb on - strand, within HMPREF1058_RS10950at 519.246 kb on - strand, within HMPREF1058_RS10950at 519.246 kb on - strand, within HMPREF1058_RS10950at 519.246 kb on - strand, within HMPREF1058_RS10950at 519.296 kb on + strandat 519.296 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Mucin from porcine stomach type II 2.5 mg/ml (C)
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517,341 + +1.7
517,341 + -0.3
517,341 + -0.2
517,360 + -0.2
517,415 + +0.6
517,423 + +1.2
517,424 - +0.6
517,425 + +0.9
517,425 + -0.3
517,425 + -1.4
517,425 + -0.6
517,426 - +0.1
517,426 - +0.3
517,426 - -1.9
517,428 - -0.9
517,488 - HMPREF1058_RS10955 0.14 -0.7
517,534 + HMPREF1058_RS10955 0.19 -1.7
517,608 + HMPREF1058_RS10955 0.26 +0.0
517,754 + HMPREF1058_RS10955 0.41 +0.6
517,755 - HMPREF1058_RS10955 0.41 +1.6
517,880 + HMPREF1058_RS10955 0.54 +0.2
517,881 - HMPREF1058_RS10955 0.54 -1.8
517,886 + HMPREF1058_RS10955 0.54 -1.3
517,886 + HMPREF1058_RS10955 0.54 -0.9
517,888 + HMPREF1058_RS10955 0.55 -0.2
517,988 + -0.3
518,105 + HMPREF1058_RS10955 0.77 -0.9
518,106 - HMPREF1058_RS10955 0.77 -0.0
518,106 - HMPREF1058_RS10955 0.77 -2.6
518,126 + HMPREF1058_RS10955 0.79 -1.4
518,152 + HMPREF1058_RS10955 0.82 +0.1
518,153 - HMPREF1058_RS10955 0.82 -0.5
518,157 + HMPREF1058_RS10955 0.82 +0.1
518,175 + HMPREF1058_RS10955 0.84 -2.3
518,179 + HMPREF1058_RS10955 0.84 -1.3
518,186 - HMPREF1058_RS10955 0.85 -0.1
518,186 - HMPREF1058_RS10955 0.85 -0.9
518,186 - HMPREF1058_RS10955 0.85 +0.0
518,202 + HMPREF1058_RS10955 0.87 -2.2
518,217 + HMPREF1058_RS10955 0.88 -0.4
518,262 + +1.0
518,263 - -0.3
518,263 - -2.0
518,263 - -0.1
518,273 + +0.9
518,273 + +0.2
518,277 + -0.7
518,277 + -0.9
518,277 + -0.3
518,277 + +0.8
518,279 + -0.2
518,279 + -0.8
518,280 - -0.6
518,280 - -0.6
518,283 + -0.3
518,305 + -0.1
518,346 - -0.8
518,346 - -0.1
518,504 - -0.5
518,518 - -0.4
518,546 - -1.2
518,580 + -0.4
518,590 + +0.0
518,591 - -0.5
518,597 + HMPREF1058_RS10950 0.11 +0.5
518,598 - HMPREF1058_RS10950 0.11 -0.5
518,598 - HMPREF1058_RS10950 0.11 +0.6
518,624 - HMPREF1058_RS10950 0.14 +0.4
518,636 - HMPREF1058_RS10950 0.15 -1.8
518,661 + HMPREF1058_RS10950 0.18 -0.7
518,661 + +0.3
518,700 + HMPREF1058_RS10950 0.23 -0.7
518,701 - HMPREF1058_RS10950 0.23 +0.2
518,702 + HMPREF1058_RS10950 0.23 -0.0
518,703 - HMPREF1058_RS10950 0.23 -0.5
518,726 + HMPREF1058_RS10950 0.26 -0.2
518,726 + HMPREF1058_RS10950 0.26 -0.5
518,726 + HMPREF1058_RS10950 0.26 +0.0
518,728 + HMPREF1058_RS10950 0.26 -2.9
518,755 - HMPREF1058_RS10950 0.29 +0.2
518,796 + HMPREF1058_RS10950 0.34 -0.0
518,809 + HMPREF1058_RS10950 0.35 -0.0
518,809 + HMPREF1058_RS10950 0.35 -0.1
518,875 + HMPREF1058_RS10950 0.43 -0.6
518,876 - HMPREF1058_RS10950 0.43 -1.4
518,880 + HMPREF1058_RS10950 0.44 +0.1
518,911 + HMPREF1058_RS10950 0.47 +0.2
518,941 - HMPREF1058_RS10950 0.51 -0.1
518,987 - HMPREF1058_RS10950 0.56 -0.3
519,060 + HMPREF1058_RS10950 0.65 -0.7
519,091 - HMPREF1058_RS10950 0.69 -0.6
519,134 - HMPREF1058_RS10950 0.74 -0.6
519,191 - HMPREF1058_RS10950 0.80 +0.2
519,191 - HMPREF1058_RS10950 0.80 +0.2
519,208 - HMPREF1058_RS10950 0.82 -0.3
519,208 - HMPREF1058_RS10950 0.82 -0.6
519,246 - HMPREF1058_RS10950 0.87 +0.1
519,246 - HMPREF1058_RS10950 0.87 -0.2
519,246 - HMPREF1058_RS10950 0.87 -0.7
519,296 + +0.2
519,296 + -0.6

Or see this region's nucleotide sequence