Experiment: Mucin from porcine stomach type II 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS10660 and HMPREF1058_RS10655 are separated by 108 nucleotides HMPREF1058_RS10655 and HMPREF1058_RS10650 are separated by 1 nucleotides HMPREF1058_RS10650 and HMPREF1058_RS10645 are separated by 12 nucleotides
HMPREF1058_RS10660: HMPREF1058_RS10660 - DUF1573 domain-containing protein, at 607,685 to 608,422
_RS10660
HMPREF1058_RS10655: HMPREF1058_RS10655 - hydroxymyristoyl-ACP dehydratase, at 608,531 to 608,911
_RS10655
HMPREF1058_RS10650: HMPREF1058_RS10650 - hypothetical protein, at 608,913 to 609,455
_RS10650
HMPREF1058_RS10645: HMPREF1058_RS10645 - ATP-binding protein, at 609,468 to 611,042
_RS10645
Position (kb) 608
609
610 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 608.040 kb on + strand, within HMPREF1058_RS10660 at 608.040 kb on + strand, within HMPREF1058_RS10660 at 608.061 kb on + strand, within HMPREF1058_RS10660 at 608.061 kb on + strand, within HMPREF1058_RS10660 at 608.062 kb on - strand, within HMPREF1058_RS10660 at 608.062 kb on - strand, within HMPREF1058_RS10660 at 608.062 kb on - strand, within HMPREF1058_RS10660 at 608.063 kb on + strand, within HMPREF1058_RS10660 at 608.063 kb on + strand, within HMPREF1058_RS10660 at 608.068 kb on + strand, within HMPREF1058_RS10660 at 608.103 kb on - strand, within HMPREF1058_RS10660 at 608.103 kb on - strand, within HMPREF1058_RS10660 at 608.122 kb on - strand, within HMPREF1058_RS10660 at 608.192 kb on - strand, within HMPREF1058_RS10660 at 608.192 kb on - strand, within HMPREF1058_RS10660 at 608.200 kb on - strand, within HMPREF1058_RS10660 at 608.272 kb on + strand, within HMPREF1058_RS10660 at 608.276 kb on - strand, within HMPREF1058_RS10660 at 608.276 kb on - strand, within HMPREF1058_RS10660 at 608.280 kb on - strand, within HMPREF1058_RS10660 at 608.314 kb on + strand, within HMPREF1058_RS10660 at 608.315 kb on - strand, within HMPREF1058_RS10660 at 608.315 kb on - strand, within HMPREF1058_RS10660 at 608.315 kb on - strand, within HMPREF1058_RS10660 at 608.315 kb on - strand, within HMPREF1058_RS10660 at 608.370 kb on + strand at 608.371 kb on - strand at 608.384 kb on + strand at 608.391 kb on + strand at 608.392 kb on - strand at 608.421 kb on + strand at 608.423 kb on - strand at 608.435 kb on + strand at 608.477 kb on + strand at 608.539 kb on - strand at 608.542 kb on + strand at 608.543 kb on - strand at 608.543 kb on - strand at 608.636 kb on + strand, within HMPREF1058_RS10655 at 608.649 kb on - strand, within HMPREF1058_RS10655 at 608.649 kb on - strand, within HMPREF1058_RS10655 at 608.711 kb on + strand, within HMPREF1058_RS10655 at 608.711 kb on + strand, within HMPREF1058_RS10655 at 608.716 kb on - strand, within HMPREF1058_RS10655 at 608.759 kb on + strand, within HMPREF1058_RS10655 at 608.759 kb on + strand, within HMPREF1058_RS10655 at 608.770 kb on + strand, within HMPREF1058_RS10655 at 608.771 kb on - strand, within HMPREF1058_RS10655 at 608.771 kb on - strand, within HMPREF1058_RS10655 at 608.841 kb on - strand, within HMPREF1058_RS10655 at 608.847 kb on - strand, within HMPREF1058_RS10655 at 608.911 kb on + strand at 608.925 kb on + strand at 608.926 kb on - strand at 608.926 kb on - strand at 609.068 kb on + strand, within HMPREF1058_RS10650 at 609.081 kb on - strand, within HMPREF1058_RS10650 at 609.177 kb on + strand, within HMPREF1058_RS10650 at 609.180 kb on + strand, within HMPREF1058_RS10650 at 609.181 kb on - strand, within HMPREF1058_RS10650 at 609.181 kb on - strand, within HMPREF1058_RS10650 at 609.230 kb on - strand, within HMPREF1058_RS10650 at 609.240 kb on + strand, within HMPREF1058_RS10650 at 609.241 kb on - strand, within HMPREF1058_RS10650 at 609.470 kb on - strand at 609.499 kb on - strand at 609.574 kb on + strand at 609.588 kb on + strand at 609.640 kb on + strand, within HMPREF1058_RS10645 at 609.646 kb on + strand, within HMPREF1058_RS10645 at 609.647 kb on - strand at 610.043 kb on - strand, within HMPREF1058_RS10645 at 610.043 kb on - strand, within HMPREF1058_RS10645 at 610.050 kb on - strand, within HMPREF1058_RS10645 at 610.078 kb on + strand at 610.162 kb on + strand, within HMPREF1058_RS10645 at 610.240 kb on + strand, within HMPREF1058_RS10645 at 610.241 kb on + strand, within HMPREF1058_RS10645 at 610.242 kb on + strand, within HMPREF1058_RS10645 at 610.243 kb on - strand, within HMPREF1058_RS10645 at 610.243 kb on - strand, within HMPREF1058_RS10645 at 610.316 kb on + strand, within HMPREF1058_RS10645 at 610.361 kb on - strand, within HMPREF1058_RS10645 at 610.382 kb on + strand, within HMPREF1058_RS10645
Per-strain Table
Position Strand Gene LocusTag Fraction Mucin from porcine stomach type II 2.5 mg/ml (C) remove 608,040 + HMPREF1058_RS10660 0.48 +0.2 608,040 + HMPREF1058_RS10660 0.48 +0.2 608,061 + HMPREF1058_RS10660 0.51 -1.3 608,061 + HMPREF1058_RS10660 0.51 +0.0 608,062 - HMPREF1058_RS10660 0.51 -1.0 608,062 - HMPREF1058_RS10660 0.51 -1.2 608,062 - HMPREF1058_RS10660 0.51 -1.3 608,063 + HMPREF1058_RS10660 0.51 +0.7 608,063 + HMPREF1058_RS10660 0.51 -0.5 608,068 + HMPREF1058_RS10660 0.52 +0.7 608,103 - HMPREF1058_RS10660 0.57 +0.1 608,103 - HMPREF1058_RS10660 0.57 +0.1 608,122 - HMPREF1058_RS10660 0.59 +2.1 608,192 - HMPREF1058_RS10660 0.69 +0.5 608,192 - HMPREF1058_RS10660 0.69 -0.8 608,200 - HMPREF1058_RS10660 0.70 +0.0 608,272 + HMPREF1058_RS10660 0.80 +0.4 608,276 - HMPREF1058_RS10660 0.80 +3.9 608,276 - HMPREF1058_RS10660 0.80 +1.5 608,280 - HMPREF1058_RS10660 0.81 +1.7 608,314 + HMPREF1058_RS10660 0.85 -0.4 608,315 - HMPREF1058_RS10660 0.85 +1.0 608,315 - HMPREF1058_RS10660 0.85 -0.4 608,315 - HMPREF1058_RS10660 0.85 -0.3 608,315 - HMPREF1058_RS10660 0.85 +0.9 608,370 + -0.2 608,371 - -0.1 608,384 + -0.9 608,391 + -0.8 608,392 - -0.8 608,421 + +1.4 608,423 - -0.1 608,435 + -0.2 608,477 + +1.3 608,539 - +4.2 608,542 + -0.2 608,543 - -0.3 608,543 - -0.3 608,636 + HMPREF1058_RS10655 0.28 -0.3 608,649 - HMPREF1058_RS10655 0.31 +0.9 608,649 - HMPREF1058_RS10655 0.31 -1.1 608,711 + HMPREF1058_RS10655 0.47 -0.6 608,711 + HMPREF1058_RS10655 0.47 +0.8 608,716 - HMPREF1058_RS10655 0.49 -0.7 608,759 + HMPREF1058_RS10655 0.60 +0.6 608,759 + HMPREF1058_RS10655 0.60 +1.4 608,770 + HMPREF1058_RS10655 0.63 -0.4 608,771 - HMPREF1058_RS10655 0.63 +0.0 608,771 - HMPREF1058_RS10655 0.63 +1.4 608,841 - HMPREF1058_RS10655 0.81 -0.3 608,847 - HMPREF1058_RS10655 0.83 -0.2 608,911 + -0.2 608,925 + -0.8 608,926 - -0.7 608,926 - -0.3 609,068 + HMPREF1058_RS10650 0.29 +0.0 609,081 - HMPREF1058_RS10650 0.31 -1.1 609,177 + HMPREF1058_RS10650 0.49 -0.5 609,180 + HMPREF1058_RS10650 0.49 -0.1 609,181 - HMPREF1058_RS10650 0.49 -1.7 609,181 - HMPREF1058_RS10650 0.49 -0.2 609,230 - HMPREF1058_RS10650 0.58 -0.6 609,240 + HMPREF1058_RS10650 0.60 -1.2 609,241 - HMPREF1058_RS10650 0.60 -2.0 609,470 - +0.3 609,499 - -0.0 609,574 + -0.6 609,588 + +0.2 609,640 + HMPREF1058_RS10645 0.11 -0.7 609,646 + HMPREF1058_RS10645 0.11 -0.6 609,647 - +2.9 610,043 - HMPREF1058_RS10645 0.37 +0.3 610,043 - HMPREF1058_RS10645 0.37 +0.9 610,050 - HMPREF1058_RS10645 0.37 -0.8 610,078 + -0.8 610,162 + HMPREF1058_RS10645 0.44 +1.6 610,240 + HMPREF1058_RS10645 0.49 +1.9 610,241 + HMPREF1058_RS10645 0.49 -0.9 610,242 + HMPREF1058_RS10645 0.49 +2.5 610,243 - HMPREF1058_RS10645 0.49 -0.2 610,243 - HMPREF1058_RS10645 0.49 +4.1 610,316 + HMPREF1058_RS10645 0.54 +0.0 610,361 - HMPREF1058_RS10645 0.57 +0.2 610,382 + HMPREF1058_RS10645 0.58 +0.1
Or see this region's nucleotide sequence