Experiment: Mucin from porcine stomach type II 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS09940 and HMPREF1058_RS09935 overlap by 4 nucleotides HMPREF1058_RS09935 and HMPREF1058_RS09930 are separated by 18 nucleotides HMPREF1058_RS09930 and HMPREF1058_RS09925 are separated by 8 nucleotides HMPREF1058_RS09925 and HMPREF1058_RS09920 are separated by 2 nucleotides
HMPREF1058_RS09940: HMPREF1058_RS09940 - lysozyme, at 757,255 to 757,782
_RS09940
HMPREF1058_RS09935: HMPREF1058_RS09935 - DUF3872 domain-containing protein, at 757,779 to 758,285
_RS09935
HMPREF1058_RS09930: HMPREF1058_RS09930 - toprim domain-containing protein, at 758,304 to 759,179
_RS09930
HMPREF1058_RS09925: HMPREF1058_RS09925 - conjugal transfer protein TraO, at 759,188 to 759,763
_RS09925
HMPREF1058_RS09920: HMPREF1058_RS09920 - conjugative transposon protein TraN, at 759,766 to 760,752
_RS09920
Position (kb) 758
759
760 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 757.325 kb on + strand, within HMPREF1058_RS09940 at 757.325 kb on + strand, within HMPREF1058_RS09940 at 757.344 kb on - strand, within HMPREF1058_RS09940 at 757.344 kb on - strand, within HMPREF1058_RS09940 at 757.824 kb on - strand at 757.939 kb on + strand, within HMPREF1058_RS09935 at 757.940 kb on - strand, within HMPREF1058_RS09935 at 757.940 kb on - strand, within HMPREF1058_RS09935 at 757.940 kb on - strand, within HMPREF1058_RS09935 at 757.942 kb on + strand, within HMPREF1058_RS09935 at 757.943 kb on - strand, within HMPREF1058_RS09935 at 757.943 kb on - strand, within HMPREF1058_RS09935 at 757.943 kb on - strand, within HMPREF1058_RS09935 at 758.051 kb on + strand, within HMPREF1058_RS09935 at 758.051 kb on + strand, within HMPREF1058_RS09935 at 758.052 kb on - strand, within HMPREF1058_RS09935 at 758.052 kb on - strand, within HMPREF1058_RS09935 at 758.052 kb on - strand, within HMPREF1058_RS09935 at 758.052 kb on - strand, within HMPREF1058_RS09935 at 758.052 kb on - strand, within HMPREF1058_RS09935 at 758.053 kb on + strand, within HMPREF1058_RS09935 at 758.054 kb on - strand at 758.055 kb on + strand, within HMPREF1058_RS09935 at 758.056 kb on - strand, within HMPREF1058_RS09935 at 758.056 kb on - strand, within HMPREF1058_RS09935 at 758.056 kb on - strand, within HMPREF1058_RS09935 at 758.278 kb on - strand at 758.305 kb on + strand at 758.457 kb on + strand, within HMPREF1058_RS09930 at 758.609 kb on + strand, within HMPREF1058_RS09930 at 758.805 kb on + strand, within HMPREF1058_RS09930 at 759.077 kb on - strand, within HMPREF1058_RS09930 at 759.145 kb on - strand at 759.145 kb on - strand at 759.162 kb on + strand at 759.304 kb on - strand, within HMPREF1058_RS09925 at 759.336 kb on + strand, within HMPREF1058_RS09925 at 759.529 kb on - strand, within HMPREF1058_RS09925 at 760.040 kb on + strand, within HMPREF1058_RS09920 at 760.041 kb on - strand, within HMPREF1058_RS09920 at 760.091 kb on + strand, within HMPREF1058_RS09920 at 760.113 kb on - strand, within HMPREF1058_RS09920
Per-strain Table
Position Strand Gene LocusTag Fraction Mucin from porcine stomach type II 2.5 mg/ml (C) remove 757,325 + HMPREF1058_RS09940 0.13 -0.7 757,325 + HMPREF1058_RS09940 0.13 -0.4 757,344 - HMPREF1058_RS09940 0.17 +0.6 757,344 - HMPREF1058_RS09940 0.17 +0.1 757,824 - -0.0 757,939 + HMPREF1058_RS09935 0.32 -1.3 757,940 - HMPREF1058_RS09935 0.32 -0.3 757,940 - HMPREF1058_RS09935 0.32 -1.2 757,940 - HMPREF1058_RS09935 0.32 -0.1 757,942 + HMPREF1058_RS09935 0.32 -0.1 757,943 - HMPREF1058_RS09935 0.32 -1.4 757,943 - HMPREF1058_RS09935 0.32 -0.0 757,943 - HMPREF1058_RS09935 0.32 -0.5 758,051 + HMPREF1058_RS09935 0.54 -0.2 758,051 + HMPREF1058_RS09935 0.54 +0.0 758,052 - HMPREF1058_RS09935 0.54 +0.2 758,052 - HMPREF1058_RS09935 0.54 -0.4 758,052 - HMPREF1058_RS09935 0.54 +0.9 758,052 - HMPREF1058_RS09935 0.54 -0.2 758,052 - HMPREF1058_RS09935 0.54 +0.5 758,053 + HMPREF1058_RS09935 0.54 +2.9 758,054 - +1.3 758,055 + HMPREF1058_RS09935 0.54 +0.2 758,056 - HMPREF1058_RS09935 0.55 +0.5 758,056 - HMPREF1058_RS09935 0.55 -2.0 758,056 - HMPREF1058_RS09935 0.55 +0.6 758,278 - +0.1 758,305 + -0.3 758,457 + HMPREF1058_RS09930 0.17 -0.9 758,609 + HMPREF1058_RS09930 0.35 -0.4 758,805 + HMPREF1058_RS09930 0.57 -1.0 759,077 - HMPREF1058_RS09930 0.88 +0.3 759,145 - +0.3 759,145 - +0.6 759,162 + -0.4 759,304 - HMPREF1058_RS09925 0.20 +0.0 759,336 + HMPREF1058_RS09925 0.26 +0.1 759,529 - HMPREF1058_RS09925 0.59 -0.3 760,040 + HMPREF1058_RS09920 0.28 +0.6 760,041 - HMPREF1058_RS09920 0.28 +0.2 760,091 + HMPREF1058_RS09920 0.33 +0.0 760,113 - HMPREF1058_RS09920 0.35 -0.9
Or see this region's nucleotide sequence