Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS09460

Experiment: Mucin from porcine stomach type II 2.5 mg/ml (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS20760 and HMPREF1058_RS09465 are separated by 113 nucleotidesHMPREF1058_RS09465 and HMPREF1058_RS09460 are separated by 45 nucleotidesHMPREF1058_RS09460 and HMPREF1058_RS09455 are separated by 9 nucleotides HMPREF1058_RS20760: HMPREF1058_RS20760 - GNAT family N-acetyltransferase, at 877,608 to 878,564 _RS20760 HMPREF1058_RS09465: HMPREF1058_RS09465 - porin family protein, at 878,678 to 879,169 _RS09465 HMPREF1058_RS09460: HMPREF1058_RS09460 - gamma carbonic anhydrase family protein, at 879,215 to 879,739 _RS09460 HMPREF1058_RS09455: HMPREF1058_RS09455 - aminopeptidase P family protein, at 879,749 to 881,530 _RS09455 Position (kb) 879 880Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 878.224 kb on + strand, within HMPREF1058_RS20760at 878.224 kb on + strand, within HMPREF1058_RS20760at 878.225 kb on - strand, within HMPREF1058_RS20760at 878.228 kb on + strand, within HMPREF1058_RS20760at 878.228 kb on + strand, within HMPREF1058_RS20760at 878.229 kb on - strand, within HMPREF1058_RS20760at 878.340 kb on - strand, within HMPREF1058_RS20760at 878.359 kb on - strand, within HMPREF1058_RS20760at 878.554 kb on - strandat 878.568 kb on - strandat 878.575 kb on - strandat 878.579 kb on + strandat 878.600 kb on - strandat 878.609 kb on - strandat 878.620 kb on - strandat 878.646 kb on + strandat 878.694 kb on - strandat 878.743 kb on + strand, within HMPREF1058_RS09465at 878.744 kb on - strand, within HMPREF1058_RS09465at 878.744 kb on - strand, within HMPREF1058_RS09465at 878.803 kb on + strand, within HMPREF1058_RS09465at 878.872 kb on + strand, within HMPREF1058_RS09465at 878.877 kb on + strand, within HMPREF1058_RS09465at 878.877 kb on + strand, within HMPREF1058_RS09465at 878.878 kb on - strand, within HMPREF1058_RS09465at 878.878 kb on - strand, within HMPREF1058_RS09465at 878.882 kb on - strand, within HMPREF1058_RS09465at 878.882 kb on - strand, within HMPREF1058_RS09465at 878.900 kb on + strand, within HMPREF1058_RS09465at 878.900 kb on + strandat 878.900 kb on + strand, within HMPREF1058_RS09465at 878.900 kb on + strand, within HMPREF1058_RS09465at 878.900 kb on + strand, within HMPREF1058_RS09465at 878.905 kb on + strand, within HMPREF1058_RS09465at 878.905 kb on + strand, within HMPREF1058_RS09465at 878.906 kb on - strand, within HMPREF1058_RS09465at 878.906 kb on - strand, within HMPREF1058_RS09465at 878.909 kb on - strand, within HMPREF1058_RS09465at 878.939 kb on - strand, within HMPREF1058_RS09465at 878.962 kb on + strand, within HMPREF1058_RS09465at 878.962 kb on + strand, within HMPREF1058_RS09465at 878.963 kb on - strand, within HMPREF1058_RS09465at 879.025 kb on + strand, within HMPREF1058_RS09465at 879.025 kb on + strand, within HMPREF1058_RS09465at 879.026 kb on - strand, within HMPREF1058_RS09465at 879.026 kb on - strand, within HMPREF1058_RS09465at 879.034 kb on - strand, within HMPREF1058_RS09465at 879.091 kb on + strand, within HMPREF1058_RS09465at 879.092 kb on - strand, within HMPREF1058_RS09465at 879.092 kb on - strand, within HMPREF1058_RS09465at 879.154 kb on + strandat 879.183 kb on - strandat 879.194 kb on - strandat 879.206 kb on + strandat 879.206 kb on + strandat 879.210 kb on + strandat 879.211 kb on - strandat 879.252 kb on - strandat 879.252 kb on - strandat 879.252 kb on - strandat 879.338 kb on + strand, within HMPREF1058_RS09460at 879.389 kb on + strand, within HMPREF1058_RS09460at 879.394 kb on + strand, within HMPREF1058_RS09460at 879.394 kb on + strand, within HMPREF1058_RS09460at 879.395 kb on - strand, within HMPREF1058_RS09460at 879.422 kb on + strand, within HMPREF1058_RS09460at 879.423 kb on - strand, within HMPREF1058_RS09460at 879.425 kb on + strand, within HMPREF1058_RS09460at 879.476 kb on + strand, within HMPREF1058_RS09460at 879.477 kb on - strand, within HMPREF1058_RS09460at 879.535 kb on - strand, within HMPREF1058_RS09460at 879.536 kb on + strand, within HMPREF1058_RS09460at 879.536 kb on + strand, within HMPREF1058_RS09460at 879.536 kb on + strand, within HMPREF1058_RS09460at 879.537 kb on - strand, within HMPREF1058_RS09460at 879.537 kb on - strand, within HMPREF1058_RS09460at 879.541 kb on + strand, within HMPREF1058_RS09460at 879.542 kb on - strand, within HMPREF1058_RS09460at 879.542 kb on - strand, within HMPREF1058_RS09460at 879.542 kb on - strand, within HMPREF1058_RS09460at 879.545 kb on + strand, within HMPREF1058_RS09460at 879.545 kb on + strand, within HMPREF1058_RS09460at 879.546 kb on - strand, within HMPREF1058_RS09460at 879.549 kb on - strand, within HMPREF1058_RS09460at 879.549 kb on - strand, within HMPREF1058_RS09460at 879.549 kb on - strand, within HMPREF1058_RS09460at 879.661 kb on + strand, within HMPREF1058_RS09460at 879.661 kb on + strand, within HMPREF1058_RS09460at 879.665 kb on - strand, within HMPREF1058_RS09460at 879.681 kb on - strand, within HMPREF1058_RS09460at 879.740 kb on - strandat 879.740 kb on - strandat 879.743 kb on + strandat 879.744 kb on - strandat 879.771 kb on - strandat 879.771 kb on - strandat 879.771 kb on - strandat 879.841 kb on - strandat 879.905 kb on - strandat 879.917 kb on - strandat 879.917 kb on - strandat 879.934 kb on - strand, within HMPREF1058_RS09455at 879.971 kb on + strand, within HMPREF1058_RS09455at 879.971 kb on + strand, within HMPREF1058_RS09455at 879.972 kb on - strand, within HMPREF1058_RS09455at 879.988 kb on + strand, within HMPREF1058_RS09455at 879.992 kb on + strand, within HMPREF1058_RS09455at 879.993 kb on - strand, within HMPREF1058_RS09455at 879.993 kb on - strand, within HMPREF1058_RS09455at 879.993 kb on - strand, within HMPREF1058_RS09455at 880.012 kb on + strand, within HMPREF1058_RS09455at 880.015 kb on - strand, within HMPREF1058_RS09455at 880.016 kb on + strand, within HMPREF1058_RS09455at 880.018 kb on + strand, within HMPREF1058_RS09455at 880.056 kb on - strand, within HMPREF1058_RS09455at 880.118 kb on + strand, within HMPREF1058_RS09455at 880.118 kb on + strand, within HMPREF1058_RS09455at 880.166 kb on - strand, within HMPREF1058_RS09455at 880.188 kb on - strandat 880.238 kb on - strand, within HMPREF1058_RS09455at 880.248 kb on - strand, within HMPREF1058_RS09455at 880.254 kb on - strandat 880.261 kb on - strand, within HMPREF1058_RS09455at 880.292 kb on + strand, within HMPREF1058_RS09455at 880.300 kb on + strand, within HMPREF1058_RS09455at 880.303 kb on + strand, within HMPREF1058_RS09455at 880.304 kb on - strandat 880.312 kb on + strand, within HMPREF1058_RS09455at 880.432 kb on - strand, within HMPREF1058_RS09455at 880.502 kb on - strand, within HMPREF1058_RS09455at 880.505 kb on + strand, within HMPREF1058_RS09455at 880.505 kb on + strand, within HMPREF1058_RS09455at 880.506 kb on - strand, within HMPREF1058_RS09455at 880.507 kb on + strand, within HMPREF1058_RS09455at 880.507 kb on + strand, within HMPREF1058_RS09455at 880.610 kb on + strand, within HMPREF1058_RS09455at 880.667 kb on + strand, within HMPREF1058_RS09455

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Per-strain Table

Position Strand Gene LocusTag Fraction Mucin from porcine stomach type II 2.5 mg/ml (C)
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878,224 + HMPREF1058_RS20760 0.64 -0.2
878,224 + HMPREF1058_RS20760 0.64 -0.3
878,225 - HMPREF1058_RS20760 0.64 -0.5
878,228 + HMPREF1058_RS20760 0.65 +0.3
878,228 + HMPREF1058_RS20760 0.65 -0.6
878,229 - HMPREF1058_RS20760 0.65 -0.3
878,340 - HMPREF1058_RS20760 0.76 +0.5
878,359 - HMPREF1058_RS20760 0.78 +0.2
878,554 - +0.5
878,568 - -0.2
878,575 - -0.3
878,579 + +1.1
878,600 - +0.5
878,609 - +0.0
878,620 - -0.1
878,646 + -0.1
878,694 - -1.2
878,743 + HMPREF1058_RS09465 0.13 -1.1
878,744 - HMPREF1058_RS09465 0.13 -0.3
878,744 - HMPREF1058_RS09465 0.13 -0.4
878,803 + HMPREF1058_RS09465 0.25 -0.5
878,872 + HMPREF1058_RS09465 0.39 -0.7
878,877 + HMPREF1058_RS09465 0.40 +0.0
878,877 + HMPREF1058_RS09465 0.40 -1.4
878,878 - HMPREF1058_RS09465 0.41 -0.0
878,878 - HMPREF1058_RS09465 0.41 -0.6
878,882 - HMPREF1058_RS09465 0.41 +0.3
878,882 - HMPREF1058_RS09465 0.41 -0.4
878,900 + HMPREF1058_RS09465 0.45 +0.1
878,900 + -1.1
878,900 + HMPREF1058_RS09465 0.45 +0.5
878,900 + HMPREF1058_RS09465 0.45 +0.1
878,900 + HMPREF1058_RS09465 0.45 -0.5
878,905 + HMPREF1058_RS09465 0.46 +0.1
878,905 + HMPREF1058_RS09465 0.46 +0.2
878,906 - HMPREF1058_RS09465 0.46 +0.0
878,906 - HMPREF1058_RS09465 0.46 -0.5
878,909 - HMPREF1058_RS09465 0.47 -0.4
878,939 - HMPREF1058_RS09465 0.53 -0.3
878,962 + HMPREF1058_RS09465 0.58 -0.2
878,962 + HMPREF1058_RS09465 0.58 -0.5
878,963 - HMPREF1058_RS09465 0.58 +0.2
879,025 + HMPREF1058_RS09465 0.71 -0.6
879,025 + HMPREF1058_RS09465 0.71 -1.4
879,026 - HMPREF1058_RS09465 0.71 +0.1
879,026 - HMPREF1058_RS09465 0.71 +0.5
879,034 - HMPREF1058_RS09465 0.72 +0.4
879,091 + HMPREF1058_RS09465 0.84 -0.4
879,092 - HMPREF1058_RS09465 0.84 -0.4
879,092 - HMPREF1058_RS09465 0.84 -0.2
879,154 + -0.8
879,183 - -0.6
879,194 - +0.2
879,206 + +0.5
879,206 + -0.2
879,210 + -0.4
879,211 - +0.2
879,252 - -3.5
879,252 - -2.2
879,252 - -1.8
879,338 + HMPREF1058_RS09460 0.23 -1.4
879,389 + HMPREF1058_RS09460 0.33 +0.1
879,394 + HMPREF1058_RS09460 0.34 -1.0
879,394 + HMPREF1058_RS09460 0.34 -0.9
879,395 - HMPREF1058_RS09460 0.34 -1.3
879,422 + HMPREF1058_RS09460 0.39 -0.4
879,423 - HMPREF1058_RS09460 0.40 -1.4
879,425 + HMPREF1058_RS09460 0.40 -0.4
879,476 + HMPREF1058_RS09460 0.50 -0.3
879,477 - HMPREF1058_RS09460 0.50 +0.3
879,535 - HMPREF1058_RS09460 0.61 -0.6
879,536 + HMPREF1058_RS09460 0.61 -0.6
879,536 + HMPREF1058_RS09460 0.61 +0.5
879,536 + HMPREF1058_RS09460 0.61 +0.7
879,537 - HMPREF1058_RS09460 0.61 -0.2
879,537 - HMPREF1058_RS09460 0.61 -0.2
879,541 + HMPREF1058_RS09460 0.62 -1.2
879,542 - HMPREF1058_RS09460 0.62 -1.0
879,542 - HMPREF1058_RS09460 0.62 -0.9
879,542 - HMPREF1058_RS09460 0.62 -1.0
879,545 + HMPREF1058_RS09460 0.63 -1.0
879,545 + HMPREF1058_RS09460 0.63 -0.2
879,546 - HMPREF1058_RS09460 0.63 -1.4
879,549 - HMPREF1058_RS09460 0.64 -0.6
879,549 - HMPREF1058_RS09460 0.64 -1.1
879,549 - HMPREF1058_RS09460 0.64 -1.4
879,661 + HMPREF1058_RS09460 0.85 -0.7
879,661 + HMPREF1058_RS09460 0.85 +0.0
879,665 - HMPREF1058_RS09460 0.86 -0.5
879,681 - HMPREF1058_RS09460 0.89 +0.3
879,740 - +0.0
879,740 - -0.2
879,743 + -0.2
879,744 - -0.9
879,771 - -0.2
879,771 - -0.4
879,771 - +0.4
879,841 - +0.0
879,905 - -1.5
879,917 - -0.8
879,917 - +0.2
879,934 - HMPREF1058_RS09455 0.10 +0.9
879,971 + HMPREF1058_RS09455 0.12 -0.7
879,971 + HMPREF1058_RS09455 0.12 -1.4
879,972 - HMPREF1058_RS09455 0.13 -0.7
879,988 + HMPREF1058_RS09455 0.13 +0.3
879,992 + HMPREF1058_RS09455 0.14 -1.2
879,993 - HMPREF1058_RS09455 0.14 +0.4
879,993 - HMPREF1058_RS09455 0.14 -0.1
879,993 - HMPREF1058_RS09455 0.14 +0.2
880,012 + HMPREF1058_RS09455 0.15 +0.0
880,015 - HMPREF1058_RS09455 0.15 +0.4
880,016 + HMPREF1058_RS09455 0.15 -1.0
880,018 + HMPREF1058_RS09455 0.15 -0.7
880,056 - HMPREF1058_RS09455 0.17 -0.4
880,118 + HMPREF1058_RS09455 0.21 -0.1
880,118 + HMPREF1058_RS09455 0.21 +3.2
880,166 - HMPREF1058_RS09455 0.23 +0.6
880,188 - -0.9
880,238 - HMPREF1058_RS09455 0.27 +0.9
880,248 - HMPREF1058_RS09455 0.28 +0.4
880,254 - -2.3
880,261 - HMPREF1058_RS09455 0.29 +0.4
880,292 + HMPREF1058_RS09455 0.30 -0.1
880,300 + HMPREF1058_RS09455 0.31 -2.6
880,303 + HMPREF1058_RS09455 0.31 +0.3
880,304 - -0.4
880,312 + HMPREF1058_RS09455 0.32 -0.6
880,432 - HMPREF1058_RS09455 0.38 +0.9
880,502 - HMPREF1058_RS09455 0.42 +0.1
880,505 + HMPREF1058_RS09455 0.42 -1.6
880,505 + HMPREF1058_RS09455 0.42 -0.2
880,506 - HMPREF1058_RS09455 0.42 +0.1
880,507 + HMPREF1058_RS09455 0.43 -0.5
880,507 + HMPREF1058_RS09455 0.43 -0.7
880,610 + HMPREF1058_RS09455 0.48 -0.3
880,667 + HMPREF1058_RS09455 0.52 -0.9

Or see this region's nucleotide sequence