Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS08315

Experiment: Mucin from porcine stomach type II 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mucin from porcine stomach type II 2.5 mg/ml (C)
1,193,103	-		HMPREF1058_RS08325	0.72	-0.6
1,193,104	+		HMPREF1058_RS08325	0.72	-1.4
1,193,183	+		HMPREF1058_RS08325	0.83	-1.0
1,193,250	+				-1.5
1,193,250	+				-0.7
1,193,251	-				-0.4
1,193,270	+				+0.0
1,193,282	+				-0.3
1,193,472	-		HMPREF1058_RS08320	0.24	-0.8
1,193,530	+		HMPREF1058_RS08320	0.32	+0.1
1,193,549	+		HMPREF1058_RS08320	0.35	-0.9
1,193,581	-		HMPREF1058_RS08320	0.39	+0.0
1,193,585	+		HMPREF1058_RS08320	0.40	-0.4
1,193,635	+		HMPREF1058_RS08320	0.47	-0.1
1,193,694	+		HMPREF1058_RS08320	0.55	+0.2
1,193,694	+		HMPREF1058_RS08320	0.55	+1.3
1,193,695	-		HMPREF1058_RS08320	0.55	+1.6
1,193,695	-		HMPREF1058_RS08320	0.55	-1.8
1,193,855	-		HMPREF1058_RS08320	0.77	+0.3
1,193,872	+		HMPREF1058_RS08320	0.80	+0.7
1,193,925	-		HMPREF1058_RS08320	0.87	-0.1
1,193,925	-		HMPREF1058_RS08320	0.87	+1.3
1,194,014	+				-1.3
1,194,017	+				-1.3
1,194,056	-				-0.6
1,194,088	-		HMPREF1058_RS08315	0.15	-1.0
1,194,088	-		HMPREF1058_RS08315	0.15	+0.7
1,194,150	+		HMPREF1058_RS08315	0.30	-1.4
1,194,150	+		HMPREF1058_RS08315	0.30	-1.2
1,194,201	+		HMPREF1058_RS08315	0.42	-0.7
1,194,228	-		HMPREF1058_RS08315	0.49	+0.5
1,194,316	+		HMPREF1058_RS08315	0.70	+0.1
1,194,320	+		HMPREF1058_RS08315	0.71	-1.4
1,194,320	+		HMPREF1058_RS08315	0.71	-1.2
1,194,321	-		HMPREF1058_RS08315	0.71	-0.8
1,194,321	-		HMPREF1058_RS08315	0.71	+1.1
1,194,321	-		HMPREF1058_RS08315	0.71	-1.4
1,194,447	+				-0.5
1,194,447	+				-0.5
1,194,448	-				+0.5
1,194,463	+				+1.1
1,194,493	-				-1.5
1,194,501	+				+0.3
1,194,501	+				-1.0
1,194,501	+				+0.2
1,194,620	-		HMPREF1058_RS08310	0.19	-0.6
1,194,633	+		HMPREF1058_RS08310	0.20	-0.9
1,194,633	+		HMPREF1058_RS08310	0.20	-0.5
1,194,633	+		HMPREF1058_RS08310	0.20	-0.7
1,194,633	+		HMPREF1058_RS08310	0.20	-1.0
1,194,633	+		HMPREF1058_RS08310	0.20	-0.3
1,194,633	+		HMPREF1058_RS08310	0.20	+0.1
1,194,634	-		HMPREF1058_RS08310	0.20	-0.4
1,194,634	-		HMPREF1058_RS08310	0.20	-0.5
1,194,634	-		HMPREF1058_RS08310	0.20	-0.2
1,194,638	-		HMPREF1058_RS08310	0.21	+0.2
1,194,640	-		HMPREF1058_RS08310	0.21	+1.3
1,194,640	-		HMPREF1058_RS08310	0.21	+1.8
1,194,673	-		HMPREF1058_RS08310	0.25	-1.3
1,195,133	+		HMPREF1058_RS08310	0.76	-0.2
1,195,133	+		HMPREF1058_RS08310	0.76	-0.3
1,195,176	+		HMPREF1058_RS08310	0.81	-0.2
1,195,219	+		HMPREF1058_RS08310	0.86	+0.2
1,195,225	+		HMPREF1058_RS08310	0.86	-0.5
1,195,315	+				-0.2
1,195,321	+				+1.3
1,195,321	+				+0.5
1,195,325	+				-0.1
1,195,328	+				+0.2
1,195,328	+				-0.6
1,195,348	+				+0.1
1,195,361	+				-0.2
1,195,361	+				-0.5