Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS07455

Experiment: Mucin from porcine stomach type II 2.5 mg/ml (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS07460 and HMPREF1058_RS07455 are separated by 53 nucleotidesHMPREF1058_RS07455 and HMPREF1058_RS07450 are separated by 90 nucleotides HMPREF1058_RS07460: HMPREF1058_RS07460 - DUF1343 domain-containing protein, at 219,119 to 220,279 _RS07460 HMPREF1058_RS07455: HMPREF1058_RS07455 - HDIG domain-containing protein, at 220,333 to 220,869 _RS07455 HMPREF1058_RS07450: HMPREF1058_RS07450 - LPS-assembly protein LptD, at 220,960 to 223,695 _RS07450 Position (kb) 220 221Strain fitness (log2 ratio) -2 -1 0 1at 219.394 kb on + strand, within HMPREF1058_RS07460at 219.476 kb on + strand, within HMPREF1058_RS07460at 219.497 kb on - strand, within HMPREF1058_RS07460at 219.547 kb on - strand, within HMPREF1058_RS07460at 219.855 kb on - strand, within HMPREF1058_RS07460at 219.858 kb on + strand, within HMPREF1058_RS07460at 219.876 kb on + strand, within HMPREF1058_RS07460at 219.876 kb on + strand, within HMPREF1058_RS07460at 219.876 kb on + strand, within HMPREF1058_RS07460at 219.876 kb on + strand, within HMPREF1058_RS07460at 219.877 kb on - strand, within HMPREF1058_RS07460at 219.877 kb on - strand, within HMPREF1058_RS07460at 219.882 kb on + strand, within HMPREF1058_RS07460at 219.896 kb on + strand, within HMPREF1058_RS07460at 219.927 kb on - strand, within HMPREF1058_RS07460at 219.950 kb on - strand, within HMPREF1058_RS07460at 219.969 kb on + strand, within HMPREF1058_RS07460at 220.082 kb on + strand, within HMPREF1058_RS07460at 220.083 kb on - strand, within HMPREF1058_RS07460at 220.083 kb on - strand, within HMPREF1058_RS07460at 220.083 kb on - strand, within HMPREF1058_RS07460at 220.170 kb on - strandat 220.172 kb on + strandat 220.173 kb on - strandat 220.178 kb on + strandat 220.179 kb on - strandat 220.240 kb on + strandat 220.356 kb on + strandat 220.360 kb on + strandat 220.389 kb on + strand, within HMPREF1058_RS07455at 220.390 kb on - strand, within HMPREF1058_RS07455at 220.509 kb on + strand, within HMPREF1058_RS07455at 220.515 kb on + strand, within HMPREF1058_RS07455at 220.559 kb on - strand, within HMPREF1058_RS07455at 220.561 kb on - strand, within HMPREF1058_RS07455at 220.665 kb on + strand, within HMPREF1058_RS07455at 220.666 kb on - strand, within HMPREF1058_RS07455at 220.842 kb on + strandat 220.896 kb on + strandat 220.925 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Mucin from porcine stomach type II 2.5 mg/ml (C)
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219,394 + HMPREF1058_RS07460 0.24 -0.6
219,476 + HMPREF1058_RS07460 0.31 -1.3
219,497 - HMPREF1058_RS07460 0.33 +0.3
219,547 - HMPREF1058_RS07460 0.37 +0.6
219,855 - HMPREF1058_RS07460 0.63 +0.5
219,858 + HMPREF1058_RS07460 0.64 +0.7
219,876 + HMPREF1058_RS07460 0.65 -0.2
219,876 + HMPREF1058_RS07460 0.65 +0.4
219,876 + HMPREF1058_RS07460 0.65 -0.7
219,876 + HMPREF1058_RS07460 0.65 -1.2
219,877 - HMPREF1058_RS07460 0.65 -0.3
219,877 - HMPREF1058_RS07460 0.65 -0.6
219,882 + HMPREF1058_RS07460 0.66 +0.3
219,896 + HMPREF1058_RS07460 0.67 +0.4
219,927 - HMPREF1058_RS07460 0.70 +0.1
219,950 - HMPREF1058_RS07460 0.72 +0.9
219,969 + HMPREF1058_RS07460 0.73 +0.4
220,082 + HMPREF1058_RS07460 0.83 +1.2
220,083 - HMPREF1058_RS07460 0.83 +0.0
220,083 - HMPREF1058_RS07460 0.83 -0.7
220,083 - HMPREF1058_RS07460 0.83 +0.7
220,170 - -1.4
220,172 + -0.3
220,173 - +0.8
220,178 + +0.0
220,179 - -0.0
220,240 + -0.2
220,356 + +0.1
220,360 + -0.3
220,389 + HMPREF1058_RS07455 0.10 -0.6
220,390 - HMPREF1058_RS07455 0.11 -0.7
220,509 + HMPREF1058_RS07455 0.33 -0.8
220,515 + HMPREF1058_RS07455 0.34 -1.2
220,559 - HMPREF1058_RS07455 0.42 -0.8
220,561 - HMPREF1058_RS07455 0.42 -2.3
220,665 + HMPREF1058_RS07455 0.62 -0.2
220,666 - HMPREF1058_RS07455 0.62 -2.6
220,842 + +0.6
220,896 + -0.4
220,925 + -0.6

Or see this region's nucleotide sequence