Experiment: Mucin from porcine stomach type II 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS07345 and HMPREF1058_RS21460 are separated by 319 nucleotides HMPREF1058_RS21460 and HMPREF1058_RS07340 overlap by 35 nucleotides HMPREF1058_RS07340 and HMPREF1058_RS07335 are separated by 214 nucleotides
HMPREF1058_RS07345: HMPREF1058_RS07345 - hypothetical protein, at 255,019 to 255,690
_RS07345
HMPREF1058_RS21460: HMPREF1058_RS21460 - hypothetical protein, at 256,010 to 256,129
_RS21460
HMPREF1058_RS07340: HMPREF1058_RS07340 - HU family DNA-binding protein, at 256,095 to 256,799
_RS07340
HMPREF1058_RS07335: HMPREF1058_RS07335 - TolC family protein, at 257,014 to 258,393
_RS07335
Position (kb) 256
257 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 255.112 kb on + strand, within HMPREF1058_RS07345 at 255.156 kb on + strand, within HMPREF1058_RS07345 at 255.222 kb on + strand, within HMPREF1058_RS07345 at 255.331 kb on + strand, within HMPREF1058_RS07345 at 255.331 kb on + strand, within HMPREF1058_RS07345 at 255.332 kb on - strand, within HMPREF1058_RS07345 at 255.332 kb on - strand, within HMPREF1058_RS07345 at 255.332 kb on - strand, within HMPREF1058_RS07345 at 255.373 kb on + strand, within HMPREF1058_RS07345 at 255.409 kb on + strand, within HMPREF1058_RS07345 at 255.431 kb on + strand, within HMPREF1058_RS07345 at 255.432 kb on - strand, within HMPREF1058_RS07345 at 255.432 kb on - strand, within HMPREF1058_RS07345 at 255.434 kb on - strand, within HMPREF1058_RS07345 at 255.434 kb on - strand, within HMPREF1058_RS07345 at 255.442 kb on - strand, within HMPREF1058_RS07345 at 255.502 kb on - strand, within HMPREF1058_RS07345 at 255.502 kb on - strand, within HMPREF1058_RS07345 at 255.502 kb on - strand, within HMPREF1058_RS07345 at 255.507 kb on + strand, within HMPREF1058_RS07345 at 255.507 kb on + strand, within HMPREF1058_RS07345 at 255.507 kb on + strand, within HMPREF1058_RS07345 at 255.508 kb on - strand, within HMPREF1058_RS07345 at 255.508 kb on - strand, within HMPREF1058_RS07345 at 255.508 kb on - strand, within HMPREF1058_RS07345 at 255.556 kb on + strand, within HMPREF1058_RS07345 at 255.661 kb on + strand at 255.665 kb on - strand at 255.709 kb on - strand at 255.709 kb on - strand at 255.733 kb on + strand at 255.795 kb on - strand at 255.795 kb on - strand at 255.847 kb on - strand at 255.878 kb on - strand at 255.880 kb on - strand at 255.968 kb on + strand at 255.968 kb on + strand at 256.027 kb on - strand, within HMPREF1058_RS21460 at 256.183 kb on + strand, within HMPREF1058_RS07340 at 256.184 kb on - strand, within HMPREF1058_RS07340 at 256.282 kb on + strand, within HMPREF1058_RS07340 at 256.282 kb on + strand, within HMPREF1058_RS07340 at 256.364 kb on - strand, within HMPREF1058_RS07340 at 256.460 kb on - strand, within HMPREF1058_RS07340 at 256.620 kb on + strand, within HMPREF1058_RS07340 at 256.796 kb on - strand at 256.949 kb on + strand at 256.981 kb on - strand at 257.016 kb on - strand at 257.052 kb on - strand at 257.386 kb on + strand, within HMPREF1058_RS07335 at 257.387 kb on - strand, within HMPREF1058_RS07335 at 257.387 kb on - strand at 257.452 kb on + strand, within HMPREF1058_RS07335 at 257.453 kb on - strand, within HMPREF1058_RS07335 at 257.462 kb on + strand, within HMPREF1058_RS07335 at 257.581 kb on + strand, within HMPREF1058_RS07335 at 257.587 kb on + strand, within HMPREF1058_RS07335 at 257.605 kb on + strand, within HMPREF1058_RS07335 at 257.737 kb on + strand at 257.783 kb on + strand, within HMPREF1058_RS07335
Per-strain Table
Position Strand Gene LocusTag Fraction Mucin from porcine stomach type II 2.5 mg/ml (C) remove 255,112 + HMPREF1058_RS07345 0.14 +1.1 255,156 + HMPREF1058_RS07345 0.20 -0.9 255,222 + HMPREF1058_RS07345 0.30 +0.8 255,331 + HMPREF1058_RS07345 0.46 -0.8 255,331 + HMPREF1058_RS07345 0.46 +0.5 255,332 - HMPREF1058_RS07345 0.47 +1.0 255,332 - HMPREF1058_RS07345 0.47 -0.5 255,332 - HMPREF1058_RS07345 0.47 +1.1 255,373 + HMPREF1058_RS07345 0.53 -1.1 255,409 + HMPREF1058_RS07345 0.58 +2.1 255,431 + HMPREF1058_RS07345 0.61 -0.6 255,432 - HMPREF1058_RS07345 0.61 -0.7 255,432 - HMPREF1058_RS07345 0.61 +0.3 255,434 - HMPREF1058_RS07345 0.62 +2.1 255,434 - HMPREF1058_RS07345 0.62 -0.4 255,442 - HMPREF1058_RS07345 0.63 -0.7 255,502 - HMPREF1058_RS07345 0.72 +0.2 255,502 - HMPREF1058_RS07345 0.72 +0.7 255,502 - HMPREF1058_RS07345 0.72 +0.9 255,507 + HMPREF1058_RS07345 0.73 +0.2 255,507 + HMPREF1058_RS07345 0.73 +0.2 255,507 + HMPREF1058_RS07345 0.73 -0.6 255,508 - HMPREF1058_RS07345 0.73 +0.4 255,508 - HMPREF1058_RS07345 0.73 -0.2 255,508 - HMPREF1058_RS07345 0.73 +0.6 255,556 + HMPREF1058_RS07345 0.80 +0.0 255,661 + +0.1 255,665 - +0.5 255,709 - -0.6 255,709 - -0.4 255,733 + -1.1 255,795 - -2.9 255,795 - +0.2 255,847 - +0.1 255,878 - -0.4 255,880 - -0.1 255,968 + -0.4 255,968 + -0.3 256,027 - HMPREF1058_RS21460 0.14 -1.1 256,183 + HMPREF1058_RS07340 0.12 -1.3 256,184 - HMPREF1058_RS07340 0.13 -0.8 256,282 + HMPREF1058_RS07340 0.27 +0.8 256,282 + HMPREF1058_RS07340 0.27 -0.8 256,364 - HMPREF1058_RS07340 0.38 -1.3 256,460 - HMPREF1058_RS07340 0.52 -1.2 256,620 + HMPREF1058_RS07340 0.74 -0.6 256,796 - +0.3 256,949 + -0.4 256,981 - -1.0 257,016 - +0.4 257,052 - -0.1 257,386 + HMPREF1058_RS07335 0.27 +0.1 257,387 - HMPREF1058_RS07335 0.27 +0.6 257,387 - +0.1 257,452 + HMPREF1058_RS07335 0.32 -1.4 257,453 - HMPREF1058_RS07335 0.32 -0.4 257,462 + HMPREF1058_RS07335 0.32 +0.1 257,581 + HMPREF1058_RS07335 0.41 +1.9 257,587 + HMPREF1058_RS07335 0.42 -0.9 257,605 + HMPREF1058_RS07335 0.43 +0.1 257,737 + -0.2 257,783 + HMPREF1058_RS07335 0.56 +0.8
Or see this region's nucleotide sequence