Experiment: Mucin from porcine stomach type II 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS07090 and HMPREF1058_RS07085 are separated by 2 nucleotides HMPREF1058_RS07085 and HMPREF1058_RS07080 are separated by 77 nucleotides HMPREF1058_RS07080 and HMPREF1058_RS07075 are separated by 210 nucleotides HMPREF1058_RS07075 and HMPREF1058_RS07070 are separated by 125 nucleotides
HMPREF1058_RS07090: HMPREF1058_RS07090 - hypothetical protein, at 321,264 to 321,530
_RS07090
HMPREF1058_RS07085: HMPREF1058_RS07085 - phage holin family protein, at 321,533 to 321,889
_RS07085
HMPREF1058_RS07080: HMPREF1058_RS07080 - YtxH domain-containing protein, at 321,967 to 322,164
_RS07080
HMPREF1058_RS07075: HMPREF1058_RS07075 - SPOR domain-containing protein, at 322,375 to 322,872
_RS07075
HMPREF1058_RS07070: HMPREF1058_RS07070 - PCMD domain-containing protein, at 322,998 to 323,957
_RS07070
Position (kb) 322
323 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 321.376 kb on - strand, within HMPREF1058_RS07090 at 321.448 kb on - strand, within HMPREF1058_RS07090 at 321.661 kb on + strand, within HMPREF1058_RS07085 at 321.671 kb on + strand, within HMPREF1058_RS07085 at 321.671 kb on + strand, within HMPREF1058_RS07085 at 321.690 kb on + strand, within HMPREF1058_RS07085 at 321.700 kb on + strand, within HMPREF1058_RS07085 at 321.700 kb on + strand, within HMPREF1058_RS07085 at 321.711 kb on + strand, within HMPREF1058_RS07085 at 321.711 kb on + strand, within HMPREF1058_RS07085 at 321.712 kb on - strand, within HMPREF1058_RS07085 at 321.725 kb on - strand, within HMPREF1058_RS07085 at 321.735 kb on - strand, within HMPREF1058_RS07085 at 321.775 kb on + strand, within HMPREF1058_RS07085 at 321.775 kb on + strand, within HMPREF1058_RS07085 at 321.775 kb on + strand, within HMPREF1058_RS07085 at 321.792 kb on - strand, within HMPREF1058_RS07085 at 321.804 kb on - strand, within HMPREF1058_RS07085 at 321.804 kb on - strand, within HMPREF1058_RS07085 at 321.862 kb on + strand at 321.863 kb on - strand at 321.947 kb on + strand at 321.947 kb on + strand at 321.947 kb on + strand at 322.024 kb on + strand, within HMPREF1058_RS07080 at 322.025 kb on - strand, within HMPREF1058_RS07080 at 322.025 kb on - strand, within HMPREF1058_RS07080 at 322.042 kb on - strand, within HMPREF1058_RS07080 at 322.046 kb on - strand, within HMPREF1058_RS07080 at 322.149 kb on + strand at 322.149 kb on + strand at 322.149 kb on + strand at 322.305 kb on + strand at 322.307 kb on + strand at 322.327 kb on + strand at 322.327 kb on + strand at 322.329 kb on + strand at 322.348 kb on + strand at 322.349 kb on - strand at 322.352 kb on - strand at 322.352 kb on - strand at 322.386 kb on - strand at 322.454 kb on - strand, within HMPREF1058_RS07075 at 322.465 kb on + strand, within HMPREF1058_RS07075 at 322.465 kb on + strand, within HMPREF1058_RS07075 at 322.626 kb on - strand, within HMPREF1058_RS07075 at 322.634 kb on - strand, within HMPREF1058_RS07075 at 322.635 kb on + strand, within HMPREF1058_RS07075 at 322.635 kb on + strand, within HMPREF1058_RS07075 at 322.636 kb on - strand, within HMPREF1058_RS07075 at 322.641 kb on - strand, within HMPREF1058_RS07075 at 322.643 kb on + strand, within HMPREF1058_RS07075 at 322.643 kb on + strand, within HMPREF1058_RS07075 at 322.651 kb on - strand, within HMPREF1058_RS07075 at 322.691 kb on - strand, within HMPREF1058_RS07075 at 322.709 kb on - strand, within HMPREF1058_RS07075 at 322.709 kb on - strand, within HMPREF1058_RS07075 at 322.728 kb on + strand, within HMPREF1058_RS07075 at 322.729 kb on - strand, within HMPREF1058_RS07075 at 322.743 kb on + strand, within HMPREF1058_RS07075 at 322.819 kb on + strand, within HMPREF1058_RS07075 at 322.853 kb on + strand at 322.856 kb on + strand at 322.856 kb on + strand at 322.857 kb on - strand at 322.857 kb on - strand at 322.858 kb on + strand at 322.860 kb on + strand at 322.861 kb on - strand at 322.861 kb on - strand at 322.861 kb on - strand at 322.865 kb on + strand at 322.865 kb on + strand at 322.866 kb on - strand at 322.867 kb on + strand at 322.871 kb on - strand at 322.904 kb on - strand at 322.906 kb on - strand at 322.910 kb on + strand at 322.959 kb on + strand at 323.005 kb on - strand at 323.005 kb on - strand at 323.008 kb on - strand at 323.041 kb on + strand at 323.042 kb on - strand at 323.052 kb on + strand at 323.083 kb on + strand at 323.170 kb on + strand at 323.196 kb on - strand, within HMPREF1058_RS07070 at 323.196 kb on - strand, within HMPREF1058_RS07070 at 323.207 kb on + strand, within HMPREF1058_RS07070 at 323.208 kb on - strand, within HMPREF1058_RS07070 at 323.280 kb on - strand, within HMPREF1058_RS07070 at 323.338 kb on + strand, within HMPREF1058_RS07070 at 323.353 kb on + strand, within HMPREF1058_RS07070 at 323.369 kb on + strand, within HMPREF1058_RS07070 at 323.369 kb on + strand, within HMPREF1058_RS07070 at 323.372 kb on + strand, within HMPREF1058_RS07070 at 323.397 kb on + strand, within HMPREF1058_RS07070 at 323.408 kb on + strand, within HMPREF1058_RS07070 at 323.408 kb on + strand, within HMPREF1058_RS07070 at 323.502 kb on + strand, within HMPREF1058_RS07070 at 323.510 kb on - strand, within HMPREF1058_RS07070 at 323.534 kb on + strand, within HMPREF1058_RS07070 at 323.616 kb on - strand, within HMPREF1058_RS07070 at 323.709 kb on - strand, within HMPREF1058_RS07070 at 323.709 kb on - strand, within HMPREF1058_RS07070 at 323.712 kb on + strand, within HMPREF1058_RS07070 at 323.713 kb on - strand, within HMPREF1058_RS07070 at 323.725 kb on - strand, within HMPREF1058_RS07070 at 323.725 kb on - strand, within HMPREF1058_RS07070 at 323.732 kb on + strand, within HMPREF1058_RS07070 at 323.733 kb on - strand, within HMPREF1058_RS07070 at 323.733 kb on - strand, within HMPREF1058_RS07070 at 323.798 kb on + strand, within HMPREF1058_RS07070 at 323.798 kb on + strand, within HMPREF1058_RS07070 at 323.799 kb on - strand, within HMPREF1058_RS07070 at 323.858 kb on + strand, within HMPREF1058_RS07070
Per-strain Table
Position Strand Gene LocusTag Fraction Mucin from porcine stomach type II 2.5 mg/ml (C) remove 321,376 - HMPREF1058_RS07090 0.42 +2.1 321,448 - HMPREF1058_RS07090 0.69 +0.5 321,661 + HMPREF1058_RS07085 0.36 -0.2 321,671 + HMPREF1058_RS07085 0.39 -0.6 321,671 + HMPREF1058_RS07085 0.39 -0.0 321,690 + HMPREF1058_RS07085 0.44 -0.5 321,700 + HMPREF1058_RS07085 0.47 +0.3 321,700 + HMPREF1058_RS07085 0.47 -0.7 321,711 + HMPREF1058_RS07085 0.50 +0.9 321,711 + HMPREF1058_RS07085 0.50 +0.1 321,712 - HMPREF1058_RS07085 0.50 +0.7 321,725 - HMPREF1058_RS07085 0.54 -1.0 321,735 - HMPREF1058_RS07085 0.57 +0.4 321,775 + HMPREF1058_RS07085 0.68 -0.9 321,775 + HMPREF1058_RS07085 0.68 -1.0 321,775 + HMPREF1058_RS07085 0.68 +1.3 321,792 - HMPREF1058_RS07085 0.73 +1.1 321,804 - HMPREF1058_RS07085 0.76 -1.9 321,804 - HMPREF1058_RS07085 0.76 -0.6 321,862 + -0.2 321,863 - +2.1 321,947 + -1.4 321,947 + +2.1 321,947 + -0.9 322,024 + HMPREF1058_RS07080 0.29 -0.6 322,025 - HMPREF1058_RS07080 0.29 -0.0 322,025 - HMPREF1058_RS07080 0.29 +1.1 322,042 - HMPREF1058_RS07080 0.38 -0.2 322,046 - HMPREF1058_RS07080 0.40 -0.3 322,149 + -0.2 322,149 + +0.4 322,149 + +0.1 322,305 + +0.0 322,307 + +1.6 322,327 + -0.4 322,327 + +0.3 322,329 + +0.3 322,348 + -0.2 322,349 - -1.4 322,352 - -0.2 322,352 - +3.1 322,386 - -2.5 322,454 - HMPREF1058_RS07075 0.16 -0.3 322,465 + HMPREF1058_RS07075 0.18 -2.2 322,465 + HMPREF1058_RS07075 0.18 +0.3 322,626 - HMPREF1058_RS07075 0.50 -0.8 322,634 - HMPREF1058_RS07075 0.52 +0.1 322,635 + HMPREF1058_RS07075 0.52 -1.0 322,635 + HMPREF1058_RS07075 0.52 -0.8 322,636 - HMPREF1058_RS07075 0.52 -1.2 322,641 - HMPREF1058_RS07075 0.53 +2.1 322,643 + HMPREF1058_RS07075 0.54 -0.2 322,643 + HMPREF1058_RS07075 0.54 -0.7 322,651 - HMPREF1058_RS07075 0.55 -1.0 322,691 - HMPREF1058_RS07075 0.63 -0.4 322,709 - HMPREF1058_RS07075 0.67 -1.4 322,709 - HMPREF1058_RS07075 0.67 -0.0 322,728 + HMPREF1058_RS07075 0.71 -1.2 322,729 - HMPREF1058_RS07075 0.71 +0.4 322,743 + HMPREF1058_RS07075 0.74 -0.1 322,819 + HMPREF1058_RS07075 0.89 -1.0 322,853 + +1.6 322,856 + -0.3 322,856 + -0.3 322,857 - -0.6 322,857 - +0.9 322,858 + +0.4 322,860 + +0.2 322,861 - -0.2 322,861 - +0.0 322,861 - +0.3 322,865 + +0.3 322,865 + -0.1 322,866 - -0.0 322,867 + -0.2 322,871 - +2.4 322,904 - -0.1 322,906 - -0.2 322,910 + +0.1 322,959 + -0.9 323,005 - -0.3 323,005 - +0.1 323,008 - +0.4 323,041 + -0.4 323,042 - -1.1 323,052 + -1.3 323,083 + +1.7 323,170 + +1.6 323,196 - HMPREF1058_RS07070 0.21 +1.3 323,196 - HMPREF1058_RS07070 0.21 +1.5 323,207 + HMPREF1058_RS07070 0.22 -2.1 323,208 - HMPREF1058_RS07070 0.22 -0.1 323,280 - HMPREF1058_RS07070 0.29 -0.2 323,338 + HMPREF1058_RS07070 0.35 +2.1 323,353 + HMPREF1058_RS07070 0.37 +2.1 323,369 + HMPREF1058_RS07070 0.39 +0.8 323,369 + HMPREF1058_RS07070 0.39 -0.8 323,372 + HMPREF1058_RS07070 0.39 +0.5 323,397 + HMPREF1058_RS07070 0.42 +0.4 323,408 + HMPREF1058_RS07070 0.43 +0.2 323,408 + HMPREF1058_RS07070 0.43 +0.5 323,502 + HMPREF1058_RS07070 0.53 +0.4 323,510 - HMPREF1058_RS07070 0.53 +0.3 323,534 + HMPREF1058_RS07070 0.56 -0.0 323,616 - HMPREF1058_RS07070 0.64 -0.9 323,709 - HMPREF1058_RS07070 0.74 -0.6 323,709 - HMPREF1058_RS07070 0.74 +0.9 323,712 + HMPREF1058_RS07070 0.74 +0.4 323,713 - HMPREF1058_RS07070 0.74 +0.6 323,725 - HMPREF1058_RS07070 0.76 +0.6 323,725 - HMPREF1058_RS07070 0.76 -0.2 323,732 + HMPREF1058_RS07070 0.76 -0.8 323,733 - HMPREF1058_RS07070 0.77 -0.1 323,733 - HMPREF1058_RS07070 0.77 -0.2 323,798 + HMPREF1058_RS07070 0.83 -0.0 323,798 + HMPREF1058_RS07070 0.83 +0.1 323,799 - HMPREF1058_RS07070 0.83 +0.3 323,858 + HMPREF1058_RS07070 0.90 +1.3
Or see this region's nucleotide sequence