Experiment: Mucin from porcine stomach type II 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS06570 and HMPREF1058_RS06565 are separated by 203 nucleotides HMPREF1058_RS06565 and HMPREF1058_RS06560 are separated by 401 nucleotides
HMPREF1058_RS06570: HMPREF1058_RS06570 - phosphate ABC transporter ATP-binding protein, at 446,978 to 447,730
_RS06570
HMPREF1058_RS06565: HMPREF1058_RS06565 - phosphate signaling complex protein PhoU, at 447,934 to 448,635
_RS06565
HMPREF1058_RS06560: HMPREF1058_RS06560 - carboxypeptidase-like regulatory domain-containing protein, at 449,037 to 451,610
_RS06560
Position (kb) 447
448
449 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 446.988 kb on + strand at 446.989 kb on - strand at 446.989 kb on - strand at 447.042 kb on + strand at 447.042 kb on + strand at 447.043 kb on - strand at 447.043 kb on - strand at 447.043 kb on - strand at 447.043 kb on - strand at 447.081 kb on + strand, within HMPREF1058_RS06570 at 447.191 kb on - strand, within HMPREF1058_RS06570 at 447.191 kb on - strand, within HMPREF1058_RS06570 at 447.466 kb on - strand, within HMPREF1058_RS06570 at 447.514 kb on + strand, within HMPREF1058_RS06570 at 447.532 kb on - strand, within HMPREF1058_RS06570 at 447.563 kb on + strand, within HMPREF1058_RS06570 at 447.564 kb on - strand, within HMPREF1058_RS06570 at 447.632 kb on + strand, within HMPREF1058_RS06570 at 447.633 kb on - strand, within HMPREF1058_RS06570 at 447.633 kb on - strand, within HMPREF1058_RS06570 at 447.634 kb on + strand, within HMPREF1058_RS06570 at 447.643 kb on + strand, within HMPREF1058_RS06570 at 447.654 kb on - strand, within HMPREF1058_RS06570 at 447.677 kb on - strand at 447.707 kb on + strand at 447.708 kb on - strand at 447.708 kb on - strand at 447.764 kb on - strand at 447.823 kb on + strand at 447.911 kb on + strand at 447.962 kb on + strand at 447.962 kb on + strand at 448.142 kb on - strand, within HMPREF1058_RS06565 at 448.190 kb on + strand, within HMPREF1058_RS06565 at 448.296 kb on + strand, within HMPREF1058_RS06565 at 448.299 kb on - strand, within HMPREF1058_RS06565 at 448.532 kb on + strand, within HMPREF1058_RS06565 at 448.533 kb on - strand, within HMPREF1058_RS06565 at 448.598 kb on + strand at 448.654 kb on - strand at 448.673 kb on - strand at 448.674 kb on + strand at 448.676 kb on + strand at 448.676 kb on + strand at 448.676 kb on + strand at 448.841 kb on + strand at 448.841 kb on + strand at 448.972 kb on + strand at 448.972 kb on + strand at 449.001 kb on + strand at 449.017 kb on + strand at 449.049 kb on + strand at 449.049 kb on + strand at 449.068 kb on + strand at 449.081 kb on - strand at 449.271 kb on + strand at 449.272 kb on - strand at 449.291 kb on + strand at 449.292 kb on - strand at 449.293 kb on + strand at 449.385 kb on + strand, within HMPREF1058_RS06560 at 449.399 kb on + strand, within HMPREF1058_RS06560 at 449.472 kb on + strand, within HMPREF1058_RS06560 at 449.472 kb on + strand, within HMPREF1058_RS06560 at 449.473 kb on - strand, within HMPREF1058_RS06560 at 449.483 kb on + strand, within HMPREF1058_RS06560 at 449.484 kb on - strand, within HMPREF1058_RS06560 at 449.548 kb on - strand, within HMPREF1058_RS06560 at 449.548 kb on - strand, within HMPREF1058_RS06560 at 449.548 kb on - strand, within HMPREF1058_RS06560 at 449.615 kb on + strand, within HMPREF1058_RS06560
Per-strain Table
Position Strand Gene LocusTag Fraction Mucin from porcine stomach type II 2.5 mg/ml (C) remove 446,988 + +0.6 446,989 - -0.2 446,989 - +0.3 447,042 + +3.7 447,042 + -0.0 447,043 - -0.7 447,043 - +1.6 447,043 - +0.6 447,043 - -1.8 447,081 + HMPREF1058_RS06570 0.14 -0.1 447,191 - HMPREF1058_RS06570 0.28 +0.5 447,191 - HMPREF1058_RS06570 0.28 +0.5 447,466 - HMPREF1058_RS06570 0.65 +0.5 447,514 + HMPREF1058_RS06570 0.71 -0.4 447,532 - HMPREF1058_RS06570 0.74 +0.5 447,563 + HMPREF1058_RS06570 0.78 -0.2 447,564 - HMPREF1058_RS06570 0.78 +0.9 447,632 + HMPREF1058_RS06570 0.87 +1.2 447,633 - HMPREF1058_RS06570 0.87 +0.6 447,633 - HMPREF1058_RS06570 0.87 -0.4 447,634 + HMPREF1058_RS06570 0.87 -0.3 447,643 + HMPREF1058_RS06570 0.88 +0.8 447,654 - HMPREF1058_RS06570 0.90 +0.6 447,677 - -0.5 447,707 + +0.2 447,708 - -1.2 447,708 - -0.2 447,764 - +0.1 447,823 + -0.7 447,911 + -0.3 447,962 + +0.8 447,962 + +0.6 448,142 - HMPREF1058_RS06565 0.30 -0.4 448,190 + HMPREF1058_RS06565 0.36 -1.1 448,296 + HMPREF1058_RS06565 0.52 -0.1 448,299 - HMPREF1058_RS06565 0.52 -1.0 448,532 + HMPREF1058_RS06565 0.85 -0.8 448,533 - HMPREF1058_RS06565 0.85 -1.7 448,598 + +0.8 448,654 - -0.2 448,673 - -0.7 448,674 + -0.2 448,676 + -0.2 448,676 + +0.1 448,676 + +3.2 448,841 + -2.1 448,841 + -2.3 448,972 + +0.1 448,972 + +1.7 449,001 + -2.8 449,017 + -2.2 449,049 + -1.1 449,049 + -0.6 449,068 + +0.6 449,081 - -0.2 449,271 + -1.3 449,272 - -0.4 449,291 + -0.2 449,292 - +0.6 449,293 + -0.3 449,385 + HMPREF1058_RS06560 0.14 -0.8 449,399 + HMPREF1058_RS06560 0.14 -0.8 449,472 + HMPREF1058_RS06560 0.17 -2.3 449,472 + HMPREF1058_RS06560 0.17 +0.7 449,473 - HMPREF1058_RS06560 0.17 +0.2 449,483 + HMPREF1058_RS06560 0.17 +1.2 449,484 - HMPREF1058_RS06560 0.17 -1.8 449,548 - HMPREF1058_RS06560 0.20 -0.4 449,548 - HMPREF1058_RS06560 0.20 +0.2 449,548 - HMPREF1058_RS06560 0.20 +0.6 449,615 + HMPREF1058_RS06560 0.22 +0.2
Or see this region's nucleotide sequence