Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS06300

Experiment: Mucin from porcine stomach type II 2.5 mg/ml (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS06305 and HMPREF1058_RS06300 are separated by 140 nucleotidesHMPREF1058_RS06300 and HMPREF1058_RS06295 are separated by 263 nucleotides HMPREF1058_RS06305: HMPREF1058_RS06305 - LruC domain-containing protein, at 509,635 to 511,512 _RS06305 HMPREF1058_RS06300: HMPREF1058_RS06300 - YitT family protein, at 511,653 to 512,543 _RS06300 HMPREF1058_RS06295: HMPREF1058_RS06295 - aspartate ammonia-lyase, at 512,807 to 514,240 _RS06295 Position (kb) 511 512 513Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 510.656 kb on + strand, within HMPREF1058_RS06305at 510.687 kb on + strand, within HMPREF1058_RS06305at 510.688 kb on - strand, within HMPREF1058_RS06305at 510.703 kb on - strand, within HMPREF1058_RS06305at 510.720 kb on + strand, within HMPREF1058_RS06305at 510.721 kb on - strand, within HMPREF1058_RS06305at 510.738 kb on + strand, within HMPREF1058_RS06305at 510.778 kb on - strand, within HMPREF1058_RS06305at 510.783 kb on - strand, within HMPREF1058_RS06305at 510.799 kb on - strand, within HMPREF1058_RS06305at 510.819 kb on - strand, within HMPREF1058_RS06305at 510.839 kb on - strand, within HMPREF1058_RS06305at 510.839 kb on - strand, within HMPREF1058_RS06305at 510.869 kb on - strand, within HMPREF1058_RS06305at 510.958 kb on - strand, within HMPREF1058_RS06305at 510.984 kb on + strand, within HMPREF1058_RS06305at 511.017 kb on - strand, within HMPREF1058_RS06305at 511.032 kb on - strand, within HMPREF1058_RS06305at 511.060 kb on - strand, within HMPREF1058_RS06305at 511.103 kb on + strand, within HMPREF1058_RS06305at 511.103 kb on + strand, within HMPREF1058_RS06305at 511.125 kb on - strand, within HMPREF1058_RS06305at 511.180 kb on - strand, within HMPREF1058_RS06305at 511.180 kb on - strand, within HMPREF1058_RS06305at 511.250 kb on + strand, within HMPREF1058_RS06305at 511.250 kb on + strand, within HMPREF1058_RS06305at 511.266 kb on + strand, within HMPREF1058_RS06305at 511.302 kb on + strand, within HMPREF1058_RS06305at 511.345 kb on + strandat 511.345 kb on + strandat 511.345 kb on + strandat 511.346 kb on - strandat 511.346 kb on - strandat 511.346 kb on - strandat 511.349 kb on - strandat 511.349 kb on - strandat 511.349 kb on - strandat 511.350 kb on + strandat 511.351 kb on - strandat 511.351 kb on - strandat 511.351 kb on - strandat 511.352 kb on + strandat 511.363 kb on - strandat 511.366 kb on - strandat 511.379 kb on + strandat 511.380 kb on - strandat 511.384 kb on - strandat 511.401 kb on + strandat 511.428 kb on + strandat 511.428 kb on + strandat 511.428 kb on + strandat 511.435 kb on + strandat 511.436 kb on - strandat 511.496 kb on + strandat 511.496 kb on + strandat 511.497 kb on - strandat 511.636 kb on + strandat 511.713 kb on - strandat 511.713 kb on - strandat 511.740 kb on + strandat 511.765 kb on + strand, within HMPREF1058_RS06300at 511.772 kb on + strand, within HMPREF1058_RS06300at 511.812 kb on - strand, within HMPREF1058_RS06300at 511.851 kb on + strand, within HMPREF1058_RS06300at 511.892 kb on + strand, within HMPREF1058_RS06300at 511.926 kb on + strand, within HMPREF1058_RS06300at 511.926 kb on + strand, within HMPREF1058_RS06300at 511.926 kb on + strand, within HMPREF1058_RS06300at 511.926 kb on + strand, within HMPREF1058_RS06300at 511.927 kb on - strand, within HMPREF1058_RS06300at 511.950 kb on - strand, within HMPREF1058_RS06300at 511.964 kb on - strand, within HMPREF1058_RS06300at 511.993 kb on + strand, within HMPREF1058_RS06300at 511.994 kb on - strand, within HMPREF1058_RS06300at 512.098 kb on + strand, within HMPREF1058_RS06300at 512.114 kb on + strand, within HMPREF1058_RS06300at 512.115 kb on - strand, within HMPREF1058_RS06300at 512.126 kb on + strand, within HMPREF1058_RS06300at 512.129 kb on + strand, within HMPREF1058_RS06300at 512.129 kb on + strand, within HMPREF1058_RS06300at 512.169 kb on - strand, within HMPREF1058_RS06300at 512.181 kb on + strand, within HMPREF1058_RS06300at 512.188 kb on + strand, within HMPREF1058_RS06300at 512.188 kb on + strand, within HMPREF1058_RS06300at 512.213 kb on - strand, within HMPREF1058_RS06300at 512.213 kb on - strand, within HMPREF1058_RS06300at 512.214 kb on + strand, within HMPREF1058_RS06300at 512.215 kb on - strandat 512.234 kb on + strand, within HMPREF1058_RS06300at 512.298 kb on - strand, within HMPREF1058_RS06300at 512.320 kb on + strand, within HMPREF1058_RS06300at 512.337 kb on - strand, within HMPREF1058_RS06300at 512.436 kb on - strand, within HMPREF1058_RS06300at 512.444 kb on - strand, within HMPREF1058_RS06300at 512.456 kb on - strandat 512.462 kb on + strandat 512.464 kb on + strandat 512.541 kb on + strandat 512.598 kb on - strandat 512.706 kb on - strandat 512.709 kb on - strandat 512.730 kb on - strandat 512.791 kb on - strandat 512.850 kb on + strandat 513.012 kb on + strand, within HMPREF1058_RS06295at 513.012 kb on + strand, within HMPREF1058_RS06295at 513.012 kb on + strand, within HMPREF1058_RS06295at 513.130 kb on + strand, within HMPREF1058_RS06295at 513.136 kb on + strand, within HMPREF1058_RS06295at 513.145 kb on + strand, within HMPREF1058_RS06295at 513.145 kb on + strand, within HMPREF1058_RS06295at 513.274 kb on + strand, within HMPREF1058_RS06295at 513.284 kb on + strand, within HMPREF1058_RS06295at 513.284 kb on + strand, within HMPREF1058_RS06295at 513.285 kb on - strand, within HMPREF1058_RS06295at 513.341 kb on - strand, within HMPREF1058_RS06295at 513.341 kb on - strand, within HMPREF1058_RS06295at 513.406 kb on + strand, within HMPREF1058_RS06295at 513.414 kb on + strand, within HMPREF1058_RS06295at 513.415 kb on - strand, within HMPREF1058_RS06295at 513.445 kb on - strand, within HMPREF1058_RS06295at 513.445 kb on - strand, within HMPREF1058_RS06295

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Per-strain Table

Position Strand Gene LocusTag Fraction Mucin from porcine stomach type II 2.5 mg/ml (C)
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510,656 + HMPREF1058_RS06305 0.54 -0.3
510,687 + HMPREF1058_RS06305 0.56 +0.5
510,688 - HMPREF1058_RS06305 0.56 -0.8
510,703 - HMPREF1058_RS06305 0.57 -0.2
510,720 + HMPREF1058_RS06305 0.58 +1.2
510,721 - HMPREF1058_RS06305 0.58 -0.8
510,738 + HMPREF1058_RS06305 0.59 -0.9
510,778 - HMPREF1058_RS06305 0.61 +0.1
510,783 - HMPREF1058_RS06305 0.61 -0.8
510,799 - HMPREF1058_RS06305 0.62 +0.2
510,819 - HMPREF1058_RS06305 0.63 +0.7
510,839 - HMPREF1058_RS06305 0.64 -0.2
510,839 - HMPREF1058_RS06305 0.64 +0.3
510,869 - HMPREF1058_RS06305 0.66 -1.0
510,958 - HMPREF1058_RS06305 0.70 -0.8
510,984 + HMPREF1058_RS06305 0.72 +0.9
511,017 - HMPREF1058_RS06305 0.74 -1.2
511,032 - HMPREF1058_RS06305 0.74 -0.1
511,060 - HMPREF1058_RS06305 0.76 -0.0
511,103 + HMPREF1058_RS06305 0.78 +0.0
511,103 + HMPREF1058_RS06305 0.78 +0.1
511,125 - HMPREF1058_RS06305 0.79 +0.3
511,180 - HMPREF1058_RS06305 0.82 +0.6
511,180 - HMPREF1058_RS06305 0.82 -0.5
511,250 + HMPREF1058_RS06305 0.86 +0.6
511,250 + HMPREF1058_RS06305 0.86 -0.1
511,266 + HMPREF1058_RS06305 0.87 -0.5
511,302 + HMPREF1058_RS06305 0.89 +0.0
511,345 + -0.3
511,345 + -0.9
511,345 + +0.2
511,346 - +1.8
511,346 - -0.2
511,346 - +0.5
511,349 - +0.3
511,349 - +0.4
511,349 - +0.6
511,350 + +0.9
511,351 - -0.3
511,351 - +0.6
511,351 - +0.3
511,352 + -0.3
511,363 - -0.7
511,366 - -0.9
511,379 + +0.2
511,380 - +0.3
511,384 - +0.1
511,401 + +0.1
511,428 + -0.3
511,428 + +1.2
511,428 + -0.8
511,435 + -0.7
511,436 - -0.3
511,496 + -1.0
511,496 + +1.2
511,497 - +2.2
511,636 + -1.2
511,713 - +1.1
511,713 - -0.3
511,740 + -1.8
511,765 + HMPREF1058_RS06300 0.13 -0.4
511,772 + HMPREF1058_RS06300 0.13 -0.6
511,812 - HMPREF1058_RS06300 0.18 -0.8
511,851 + HMPREF1058_RS06300 0.22 -1.5
511,892 + HMPREF1058_RS06300 0.27 -1.6
511,926 + HMPREF1058_RS06300 0.31 -1.1
511,926 + HMPREF1058_RS06300 0.31 -0.5
511,926 + HMPREF1058_RS06300 0.31 +0.4
511,926 + HMPREF1058_RS06300 0.31 -0.7
511,927 - HMPREF1058_RS06300 0.31 -1.1
511,950 - HMPREF1058_RS06300 0.33 +0.1
511,964 - HMPREF1058_RS06300 0.35 -2.2
511,993 + HMPREF1058_RS06300 0.38 -0.5
511,994 - HMPREF1058_RS06300 0.38 -0.8
512,098 + HMPREF1058_RS06300 0.50 -0.4
512,114 + HMPREF1058_RS06300 0.52 +2.2
512,115 - HMPREF1058_RS06300 0.52 -3.1
512,126 + HMPREF1058_RS06300 0.53 -0.3
512,129 + HMPREF1058_RS06300 0.53 -0.3
512,129 + HMPREF1058_RS06300 0.53 +1.2
512,169 - HMPREF1058_RS06300 0.58 -1.3
512,181 + HMPREF1058_RS06300 0.59 -1.1
512,188 + HMPREF1058_RS06300 0.60 +0.6
512,188 + HMPREF1058_RS06300 0.60 -3.0
512,213 - HMPREF1058_RS06300 0.63 -1.2
512,213 - HMPREF1058_RS06300 0.63 +0.2
512,214 + HMPREF1058_RS06300 0.63 -2.1
512,215 - -1.5
512,234 + HMPREF1058_RS06300 0.65 -0.1
512,298 - HMPREF1058_RS06300 0.72 +1.2
512,320 + HMPREF1058_RS06300 0.75 -1.3
512,337 - HMPREF1058_RS06300 0.77 +0.5
512,436 - HMPREF1058_RS06300 0.88 -0.8
512,444 - HMPREF1058_RS06300 0.89 -1.1
512,456 - -0.8
512,462 + +0.4
512,464 + -0.6
512,541 + +0.5
512,598 - +2.2
512,706 - -0.2
512,709 - -0.1
512,730 - +0.6
512,791 - -0.2
512,850 + +0.0
513,012 + HMPREF1058_RS06295 0.14 -0.5
513,012 + HMPREF1058_RS06295 0.14 +1.2
513,012 + HMPREF1058_RS06295 0.14 -0.2
513,130 + HMPREF1058_RS06295 0.23 +0.5
513,136 + HMPREF1058_RS06295 0.23 +0.1
513,145 + HMPREF1058_RS06295 0.24 -1.0
513,145 + HMPREF1058_RS06295 0.24 -0.3
513,274 + HMPREF1058_RS06295 0.33 -1.7
513,284 + HMPREF1058_RS06295 0.33 +1.4
513,284 + HMPREF1058_RS06295 0.33 -0.7
513,285 - HMPREF1058_RS06295 0.33 -0.4
513,341 - HMPREF1058_RS06295 0.37 -0.7
513,341 - HMPREF1058_RS06295 0.37 +0.9
513,406 + HMPREF1058_RS06295 0.42 -0.3
513,414 + HMPREF1058_RS06295 0.42 -0.7
513,415 - HMPREF1058_RS06295 0.42 -0.5
513,445 - HMPREF1058_RS06295 0.44 -1.0
513,445 - HMPREF1058_RS06295 0.44 +0.5

Or see this region's nucleotide sequence