Experiment: Mucin from porcine stomach type II 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS05930 and HMPREF1058_RS05925 are separated by 201 nucleotides HMPREF1058_RS05925 and HMPREF1058_RS05920 are separated by 21 nucleotides HMPREF1058_RS05920 and HMPREF1058_RS05915 overlap by 10 nucleotides HMPREF1058_RS05915 and HMPREF1058_RS05910 are separated by 186 nucleotides
HMPREF1058_RS05930: HMPREF1058_RS05930 - MFS transporter, at 46,843 to 48,120
_RS05930
HMPREF1058_RS05925: HMPREF1058_RS05925 - DUF5024 domain-containing protein, at 48,322 to 48,936
_RS05925
HMPREF1058_RS05920: HMPREF1058_RS05920 - hypothetical protein, at 48,958 to 49,524
_RS05920
HMPREF1058_RS05915: HMPREF1058_RS05915 - sigma-70 family RNA polymerase sigma factor, at 49,515 to 49,985
_RS05915
HMPREF1058_RS05910: HMPREF1058_RS05910 - galactose mutarotase, at 50,172 to 51,305
_RS05910
Position (kb) 48
49
50 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 47.982 kb on - strand, within HMPREF1058_RS05930 at 47.993 kb on - strand at 47.993 kb on - strand at 48.023 kb on + strand at 48.024 kb on - strand at 48.039 kb on + strand at 48.131 kb on + strand at 48.145 kb on + strand at 48.150 kb on + strand at 48.263 kb on + strand at 48.273 kb on - strand at 48.288 kb on - strand at 48.291 kb on - strand at 48.419 kb on - strand, within HMPREF1058_RS05925 at 48.551 kb on - strand, within HMPREF1058_RS05925 at 48.551 kb on - strand, within HMPREF1058_RS05925 at 48.606 kb on + strand, within HMPREF1058_RS05925 at 48.721 kb on + strand, within HMPREF1058_RS05925 at 49.131 kb on + strand, within HMPREF1058_RS05920 at 49.363 kb on - strand, within HMPREF1058_RS05920 at 49.363 kb on - strand, within HMPREF1058_RS05920 at 49.415 kb on - strand, within HMPREF1058_RS05920 at 49.415 kb on - strand, within HMPREF1058_RS05920 at 49.530 kb on - strand at 49.530 kb on - strand at 49.542 kb on - strand at 49.542 kb on - strand at 49.665 kb on - strand, within HMPREF1058_RS05915 at 49.692 kb on + strand, within HMPREF1058_RS05915 at 49.696 kb on - strand, within HMPREF1058_RS05915 at 49.715 kb on + strand, within HMPREF1058_RS05915 at 49.715 kb on + strand, within HMPREF1058_RS05915 at 50.040 kb on + strand at 50.041 kb on - strand at 50.046 kb on + strand at 50.104 kb on + strand at 50.124 kb on + strand at 50.125 kb on - strand at 50.125 kb on - strand at 50.126 kb on + strand at 50.126 kb on + strand at 50.126 kb on + strand at 50.127 kb on - strand at 50.127 kb on - strand at 50.129 kb on - strand at 50.183 kb on + strand at 50.183 kb on + strand at 50.192 kb on + strand at 50.192 kb on + strand at 50.229 kb on - strand at 50.229 kb on - strand at 50.229 kb on - strand at 50.307 kb on + strand, within HMPREF1058_RS05910 at 50.308 kb on - strand, within HMPREF1058_RS05910 at 50.318 kb on + strand, within HMPREF1058_RS05910 at 50.318 kb on + strand, within HMPREF1058_RS05910 at 50.413 kb on + strand, within HMPREF1058_RS05910 at 50.413 kb on + strand, within HMPREF1058_RS05910 at 50.414 kb on - strand, within HMPREF1058_RS05910 at 50.414 kb on - strand, within HMPREF1058_RS05910 at 50.436 kb on - strand, within HMPREF1058_RS05910 at 50.436 kb on - strand, within HMPREF1058_RS05910 at 50.436 kb on - strand, within HMPREF1058_RS05910 at 50.466 kb on - strand at 50.466 kb on - strand, within HMPREF1058_RS05910 at 50.474 kb on - strand, within HMPREF1058_RS05910 at 50.513 kb on + strand, within HMPREF1058_RS05910 at 50.514 kb on - strand, within HMPREF1058_RS05910 at 50.514 kb on - strand, within HMPREF1058_RS05910
Per-strain Table
Position Strand Gene LocusTag Fraction Mucin from porcine stomach type II 2.5 mg/ml (C) remove 47,982 - HMPREF1058_RS05930 0.89 +0.1 47,993 - -0.4 47,993 - +0.4 48,023 + -0.4 48,024 - -2.5 48,039 + +0.1 48,131 + -0.3 48,145 + -1.0 48,150 + -0.9 48,263 + -0.6 48,273 - +0.2 48,288 - +0.5 48,291 - +0.5 48,419 - HMPREF1058_RS05925 0.16 +2.1 48,551 - HMPREF1058_RS05925 0.37 -0.2 48,551 - HMPREF1058_RS05925 0.37 +2.6 48,606 + HMPREF1058_RS05925 0.46 +3.1 48,721 + HMPREF1058_RS05925 0.65 -1.6 49,131 + HMPREF1058_RS05920 0.31 +1.6 49,363 - HMPREF1058_RS05920 0.71 -0.8 49,363 - HMPREF1058_RS05920 0.71 -0.1 49,415 - HMPREF1058_RS05920 0.81 -0.2 49,415 - HMPREF1058_RS05920 0.81 -2.1 49,530 - -1.8 49,530 - -0.8 49,542 - -0.8 49,542 - -0.1 49,665 - HMPREF1058_RS05915 0.32 -0.1 49,692 + HMPREF1058_RS05915 0.38 +0.7 49,696 - HMPREF1058_RS05915 0.38 -2.9 49,715 + HMPREF1058_RS05915 0.42 -0.5 49,715 + HMPREF1058_RS05915 0.42 -0.1 50,040 + +0.7 50,041 - -0.3 50,046 + +0.1 50,104 + +0.5 50,124 + +2.1 50,125 - +0.6 50,125 - -0.3 50,126 + +0.1 50,126 + +0.2 50,126 + +1.2 50,127 - -0.6 50,127 - -0.7 50,129 - +0.4 50,183 + +0.8 50,183 + -0.2 50,192 + -0.5 50,192 + -0.4 50,229 - +1.6 50,229 - +0.4 50,229 - -0.2 50,307 + HMPREF1058_RS05910 0.12 +1.1 50,308 - HMPREF1058_RS05910 0.12 -1.8 50,318 + HMPREF1058_RS05910 0.13 -1.6 50,318 + HMPREF1058_RS05910 0.13 -0.8 50,413 + HMPREF1058_RS05910 0.21 +0.3 50,413 + HMPREF1058_RS05910 0.21 +1.0 50,414 - HMPREF1058_RS05910 0.21 -0.5 50,414 - HMPREF1058_RS05910 0.21 -0.4 50,436 - HMPREF1058_RS05910 0.23 +0.7 50,436 - HMPREF1058_RS05910 0.23 -0.2 50,436 - HMPREF1058_RS05910 0.23 +1.4 50,466 - -0.7 50,466 - HMPREF1058_RS05910 0.26 -0.0 50,474 - HMPREF1058_RS05910 0.27 -2.3 50,513 + HMPREF1058_RS05910 0.30 +0.3 50,514 - HMPREF1058_RS05910 0.30 -0.3 50,514 - HMPREF1058_RS05910 0.30 -0.2
Or see this region's nucleotide sequence