Experiment: Mucin from porcine stomach type II 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS05910 and HMPREF1058_RS0119820 are separated by 140 nucleotides HMPREF1058_RS0119820 and HMPREF1058_RS05905 are separated by 264 nucleotides HMPREF1058_RS05905 and HMPREF1058_RS05900 overlap by 4 nucleotides
HMPREF1058_RS05910: HMPREF1058_RS05910 - galactose mutarotase, at 50,172 to 51,305
_RS05910
HMPREF1058_RS0119820: HMPREF1058_RS0119820 - hypothetical protein, at 51,446 to 51,675
_RS0119820
HMPREF1058_RS05905: HMPREF1058_RS05905 - sigma-70 family RNA polymerase sigma factor, at 51,940 to 52,485
_RS05905
HMPREF1058_RS05900: HMPREF1058_RS05900 - autotransporter outer membrane beta-barrel domain-containing protein, at 52,482 to 53,720
_RS05900
Position (kb) 51
52
53 Strain fitness (log2 ratio) -2
-1
0
1
2 at 50.942 kb on + strand, within HMPREF1058_RS05910 at 50.942 kb on + strand, within HMPREF1058_RS05910 at 50.950 kb on - strand, within HMPREF1058_RS05910 at 50.989 kb on - strand, within HMPREF1058_RS05910 at 50.989 kb on - strand, within HMPREF1058_RS05910 at 51.032 kb on + strand, within HMPREF1058_RS05910 at 51.034 kb on + strand, within HMPREF1058_RS05910 at 51.034 kb on + strand, within HMPREF1058_RS05910 at 51.034 kb on + strand, within HMPREF1058_RS05910 at 51.101 kb on + strand, within HMPREF1058_RS05910 at 51.102 kb on - strand, within HMPREF1058_RS05910 at 51.122 kb on - strand, within HMPREF1058_RS05910 at 51.306 kb on - strand at 51.326 kb on + strand at 51.342 kb on - strand at 51.486 kb on + strand, within HMPREF1058_RS0119820 at 51.563 kb on - strand, within HMPREF1058_RS0119820 at 51.601 kb on + strand, within HMPREF1058_RS0119820 at 51.602 kb on - strand, within HMPREF1058_RS0119820 at 51.675 kb on + strand at 51.722 kb on + strand at 51.827 kb on + strand at 51.844 kb on + strand at 51.845 kb on - strand at 51.862 kb on - strand at 51.862 kb on - strand at 51.909 kb on + strand at 51.909 kb on + strand at 51.910 kb on - strand at 51.957 kb on - strand at 52.001 kb on + strand, within HMPREF1058_RS05905 at 52.003 kb on + strand, within HMPREF1058_RS05905 at 52.003 kb on + strand, within HMPREF1058_RS05905 at 52.004 kb on - strand, within HMPREF1058_RS05905 at 52.028 kb on - strand, within HMPREF1058_RS05905 at 52.046 kb on - strand, within HMPREF1058_RS05905 at 52.267 kb on - strand, within HMPREF1058_RS05905 at 52.314 kb on - strand, within HMPREF1058_RS05905 at 52.314 kb on - strand, within HMPREF1058_RS05905 at 52.369 kb on - strand, within HMPREF1058_RS05905 at 52.423 kb on + strand, within HMPREF1058_RS05905 at 52.437 kb on + strand at 52.439 kb on + strand at 52.462 kb on + strand at 52.466 kb on + strand at 52.597 kb on - strand at 52.600 kb on + strand at 52.601 kb on - strand at 52.632 kb on - strand, within HMPREF1058_RS05900 at 52.655 kb on - strand, within HMPREF1058_RS05900 at 52.674 kb on - strand, within HMPREF1058_RS05900 at 52.699 kb on + strand, within HMPREF1058_RS05900 at 52.700 kb on - strand, within HMPREF1058_RS05900 at 52.723 kb on + strand, within HMPREF1058_RS05900 at 52.872 kb on - strand, within HMPREF1058_RS05900 at 52.872 kb on - strand, within HMPREF1058_RS05900 at 52.872 kb on - strand, within HMPREF1058_RS05900 at 52.874 kb on + strand, within HMPREF1058_RS05900 at 52.877 kb on - strand, within HMPREF1058_RS05900 at 52.890 kb on - strand, within HMPREF1058_RS05900 at 52.907 kb on + strand, within HMPREF1058_RS05900 at 52.930 kb on + strand, within HMPREF1058_RS05900 at 53.068 kb on + strand, within HMPREF1058_RS05900 at 53.093 kb on + strand, within HMPREF1058_RS05900 at 53.094 kb on - strand, within HMPREF1058_RS05900 at 53.098 kb on - strand, within HMPREF1058_RS05900 at 53.161 kb on - strand, within HMPREF1058_RS05900 at 53.214 kb on + strand, within HMPREF1058_RS05900 at 53.215 kb on - strand, within HMPREF1058_RS05900 at 53.225 kb on + strand, within HMPREF1058_RS05900 at 53.225 kb on + strand, within HMPREF1058_RS05900 at 53.226 kb on - strand, within HMPREF1058_RS05900 at 53.265 kb on - strand, within HMPREF1058_RS05900 at 53.302 kb on - strand, within HMPREF1058_RS05900 at 53.302 kb on - strand, within HMPREF1058_RS05900 at 53.307 kb on + strand, within HMPREF1058_RS05900 at 53.307 kb on + strand, within HMPREF1058_RS05900 at 53.307 kb on + strand, within HMPREF1058_RS05900 at 53.330 kb on - strand, within HMPREF1058_RS05900 at 53.371 kb on - strand, within HMPREF1058_RS05900 at 53.371 kb on - strand, within HMPREF1058_RS05900 at 53.374 kb on + strand, within HMPREF1058_RS05900 at 53.375 kb on - strand, within HMPREF1058_RS05900 at 53.407 kb on - strand, within HMPREF1058_RS05900 at 53.409 kb on - strand, within HMPREF1058_RS05900
Per-strain Table
Position Strand Gene LocusTag Fraction Mucin from porcine stomach type II 2.5 mg/ml (C) remove 50,942 + HMPREF1058_RS05910 0.68 -0.2 50,942 + HMPREF1058_RS05910 0.68 -0.4 50,950 - HMPREF1058_RS05910 0.69 -0.9 50,989 - HMPREF1058_RS05910 0.72 +0.2 50,989 - HMPREF1058_RS05910 0.72 -0.9 51,032 + HMPREF1058_RS05910 0.76 +0.3 51,034 + HMPREF1058_RS05910 0.76 +0.3 51,034 + HMPREF1058_RS05910 0.76 -1.0 51,034 + HMPREF1058_RS05910 0.76 +0.1 51,101 + HMPREF1058_RS05910 0.82 +0.9 51,102 - HMPREF1058_RS05910 0.82 +0.3 51,122 - HMPREF1058_RS05910 0.84 +1.6 51,306 - +0.2 51,326 + +1.1 51,342 - -2.3 51,486 + HMPREF1058_RS0119820 0.17 -0.4 51,563 - HMPREF1058_RS0119820 0.51 -0.9 51,601 + HMPREF1058_RS0119820 0.67 +0.7 51,602 - HMPREF1058_RS0119820 0.68 +1.4 51,675 + -0.6 51,722 + -0.1 51,827 + -0.2 51,844 + -0.4 51,845 - -0.2 51,862 - +1.1 51,862 - -1.6 51,909 + -0.1 51,909 + +0.3 51,910 - -0.4 51,957 - -1.1 52,001 + HMPREF1058_RS05905 0.11 -0.6 52,003 + HMPREF1058_RS05905 0.12 -1.4 52,003 + HMPREF1058_RS05905 0.12 -0.7 52,004 - HMPREF1058_RS05905 0.12 -1.4 52,028 - HMPREF1058_RS05905 0.16 +0.9 52,046 - HMPREF1058_RS05905 0.19 +0.3 52,267 - HMPREF1058_RS05905 0.60 -1.4 52,314 - HMPREF1058_RS05905 0.68 -0.5 52,314 - HMPREF1058_RS05905 0.68 +0.2 52,369 - HMPREF1058_RS05905 0.79 -1.2 52,423 + HMPREF1058_RS05905 0.88 -0.6 52,437 + -0.8 52,439 + -0.4 52,462 + +0.2 52,466 + -0.2 52,597 - -0.7 52,600 + -0.4 52,601 - +1.1 52,632 - HMPREF1058_RS05900 0.12 -0.2 52,655 - HMPREF1058_RS05900 0.14 -0.3 52,674 - HMPREF1058_RS05900 0.15 -1.8 52,699 + HMPREF1058_RS05900 0.18 +1.0 52,700 - HMPREF1058_RS05900 0.18 +0.4 52,723 + HMPREF1058_RS05900 0.19 -0.1 52,872 - HMPREF1058_RS05900 0.31 -0.7 52,872 - HMPREF1058_RS05900 0.31 -1.2 52,872 - HMPREF1058_RS05900 0.31 -1.0 52,874 + HMPREF1058_RS05900 0.32 -0.1 52,877 - HMPREF1058_RS05900 0.32 +0.4 52,890 - HMPREF1058_RS05900 0.33 -1.0 52,907 + HMPREF1058_RS05900 0.34 +0.3 52,930 + HMPREF1058_RS05900 0.36 +0.2 53,068 + HMPREF1058_RS05900 0.47 -1.1 53,093 + HMPREF1058_RS05900 0.49 +0.1 53,094 - HMPREF1058_RS05900 0.49 +0.4 53,098 - HMPREF1058_RS05900 0.50 +2.3 53,161 - HMPREF1058_RS05900 0.55 -1.2 53,214 + HMPREF1058_RS05900 0.59 +0.1 53,215 - HMPREF1058_RS05900 0.59 -0.1 53,225 + HMPREF1058_RS05900 0.60 +1.2 53,225 + HMPREF1058_RS05900 0.60 -0.0 53,226 - HMPREF1058_RS05900 0.60 +1.8 53,265 - HMPREF1058_RS05900 0.63 +0.6 53,302 - HMPREF1058_RS05900 0.66 -0.8 53,302 - HMPREF1058_RS05900 0.66 -0.6 53,307 + HMPREF1058_RS05900 0.67 +2.1 53,307 + HMPREF1058_RS05900 0.67 -0.6 53,307 + HMPREF1058_RS05900 0.67 +0.6 53,330 - HMPREF1058_RS05900 0.68 -0.7 53,371 - HMPREF1058_RS05900 0.72 -0.7 53,371 - HMPREF1058_RS05900 0.72 -2.7 53,374 + HMPREF1058_RS05900 0.72 +0.7 53,375 - HMPREF1058_RS05900 0.72 +0.2 53,407 - HMPREF1058_RS05900 0.75 -1.1 53,409 - HMPREF1058_RS05900 0.75 +1.7
Or see this region's nucleotide sequence