Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS05805

Experiment: Mucin from porcine stomach type II 2.5 mg/ml (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS05810 and HMPREF1058_RS05805 are separated by 182 nucleotidesHMPREF1058_RS05805 and HMPREF1058_RS05800 are separated by 410 nucleotides HMPREF1058_RS05810: HMPREF1058_RS05810 - MFS transporter, at 73,123 to 74,340 _RS05810 HMPREF1058_RS05805: HMPREF1058_RS05805 - bifunctional dihydroorotate dehydrogenase B NAD binding subunit/NADPH-dependent glutamate synthase, at 74,523 to 76,820 _RS05805 HMPREF1058_RS05800: HMPREF1058_RS05800 - DUF4858 domain-containing protein, at 77,231 to 78,001 _RS05800 Position (kb) 74 75 76 77Strain fitness (log2 ratio) -2 -1 0 1 2 3at 73.537 kb on - strandat 73.582 kb on - strand, within HMPREF1058_RS05810at 73.599 kb on - strand, within HMPREF1058_RS05810at 73.616 kb on + strand, within HMPREF1058_RS05810at 73.656 kb on + strand, within HMPREF1058_RS05810at 73.660 kb on - strand, within HMPREF1058_RS05810at 73.660 kb on - strand, within HMPREF1058_RS05810at 73.679 kb on + strand, within HMPREF1058_RS05810at 73.680 kb on - strand, within HMPREF1058_RS05810at 73.718 kb on + strand, within HMPREF1058_RS05810at 73.718 kb on + strand, within HMPREF1058_RS05810at 73.821 kb on - strand, within HMPREF1058_RS05810at 73.827 kb on - strand, within HMPREF1058_RS05810at 73.847 kb on + strand, within HMPREF1058_RS05810at 73.847 kb on + strand, within HMPREF1058_RS05810at 73.848 kb on - strand, within HMPREF1058_RS05810at 73.848 kb on - strand, within HMPREF1058_RS05810at 73.848 kb on - strand, within HMPREF1058_RS05810at 73.947 kb on - strand, within HMPREF1058_RS05810at 73.949 kb on + strand, within HMPREF1058_RS05810at 73.949 kb on + strand, within HMPREF1058_RS05810at 74.013 kb on - strand, within HMPREF1058_RS05810at 74.048 kb on + strand, within HMPREF1058_RS05810at 74.077 kb on + strand, within HMPREF1058_RS05810at 74.077 kb on + strand, within HMPREF1058_RS05810at 74.248 kb on - strandat 74.248 kb on - strandat 74.298 kb on - strandat 74.298 kb on - strandat 74.299 kb on + strandat 74.313 kb on - strandat 74.390 kb on - strandat 74.398 kb on - strandat 74.458 kb on - strandat 74.509 kb on + strandat 74.578 kb on + strandat 74.579 kb on - strandat 74.607 kb on - strandat 74.664 kb on - strandat 74.686 kb on + strandat 74.708 kb on - strandat 74.711 kb on - strandat 74.765 kb on + strand, within HMPREF1058_RS05805at 74.766 kb on - strand, within HMPREF1058_RS05805at 74.766 kb on - strand, within HMPREF1058_RS05805at 74.766 kb on - strand, within HMPREF1058_RS05805at 74.769 kb on - strand, within HMPREF1058_RS05805at 74.873 kb on - strand, within HMPREF1058_RS05805at 74.924 kb on + strand, within HMPREF1058_RS05805at 74.925 kb on - strand, within HMPREF1058_RS05805at 74.925 kb on - strand, within HMPREF1058_RS05805at 74.977 kb on + strand, within HMPREF1058_RS05805at 74.984 kb on + strand, within HMPREF1058_RS05805at 74.985 kb on - strand, within HMPREF1058_RS05805at 75.307 kb on + strand, within HMPREF1058_RS05805at 75.332 kb on - strand, within HMPREF1058_RS05805at 75.406 kb on + strand, within HMPREF1058_RS05805at 75.579 kb on - strand, within HMPREF1058_RS05805at 75.703 kb on + strand, within HMPREF1058_RS05805at 75.772 kb on + strand, within HMPREF1058_RS05805at 75.909 kb on - strand, within HMPREF1058_RS05805at 75.938 kb on - strand, within HMPREF1058_RS05805at 75.971 kb on - strand, within HMPREF1058_RS05805at 76.018 kb on + strand, within HMPREF1058_RS05805at 76.018 kb on + strand, within HMPREF1058_RS05805at 76.123 kb on + strand, within HMPREF1058_RS05805at 76.124 kb on - strand, within HMPREF1058_RS05805at 76.181 kb on + strand, within HMPREF1058_RS05805at 76.219 kb on + strand, within HMPREF1058_RS05805at 76.253 kb on + strand, within HMPREF1058_RS05805at 76.261 kb on + strandat 76.279 kb on + strand, within HMPREF1058_RS05805at 76.462 kb on - strand, within HMPREF1058_RS05805at 76.557 kb on - strand, within HMPREF1058_RS05805at 76.557 kb on - strand, within HMPREF1058_RS05805at 76.557 kb on - strand, within HMPREF1058_RS05805at 76.712 kb on + strandat 76.749 kb on - strandat 76.749 kb on - strandat 76.818 kb on + strandat 76.819 kb on - strandat 76.879 kb on + strandat 76.926 kb on - strandat 76.927 kb on + strandat 76.927 kb on + strandat 76.928 kb on - strandat 76.933 kb on + strandat 76.955 kb on + strandat 76.955 kb on + strandat 76.955 kb on + strandat 76.955 kb on + strandat 76.956 kb on - strandat 76.956 kb on - strandat 76.956 kb on - strandat 76.956 kb on - strandat 76.977 kb on + strandat 77.046 kb on + strandat 77.047 kb on - strandat 77.054 kb on + strandat 77.055 kb on - strandat 77.144 kb on - strandat 77.157 kb on - strandat 77.194 kb on - strandat 77.210 kb on - strandat 77.256 kb on + strandat 77.277 kb on + strandat 77.278 kb on - strandat 77.323 kb on - strandat 77.414 kb on - strand, within HMPREF1058_RS05800at 77.415 kb on + strand, within HMPREF1058_RS05800at 77.423 kb on - strand, within HMPREF1058_RS05800at 77.527 kb on + strand, within HMPREF1058_RS05800at 77.813 kb on + strand, within HMPREF1058_RS05800

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Per-strain Table

Position Strand Gene LocusTag Fraction Mucin from porcine stomach type II 2.5 mg/ml (C)
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73,537 - -0.2
73,582 - HMPREF1058_RS05810 0.38 -0.3
73,599 - HMPREF1058_RS05810 0.39 +0.2
73,616 + HMPREF1058_RS05810 0.40 +1.0
73,656 + HMPREF1058_RS05810 0.44 -0.8
73,660 - HMPREF1058_RS05810 0.44 +1.0
73,660 - HMPREF1058_RS05810 0.44 -0.6
73,679 + HMPREF1058_RS05810 0.46 +0.7
73,680 - HMPREF1058_RS05810 0.46 -0.3
73,718 + HMPREF1058_RS05810 0.49 +0.1
73,718 + HMPREF1058_RS05810 0.49 +0.3
73,821 - HMPREF1058_RS05810 0.57 -0.2
73,827 - HMPREF1058_RS05810 0.58 -0.2
73,847 + HMPREF1058_RS05810 0.59 +0.4
73,847 + HMPREF1058_RS05810 0.59 +0.3
73,848 - HMPREF1058_RS05810 0.60 -0.2
73,848 - HMPREF1058_RS05810 0.60 +0.8
73,848 - HMPREF1058_RS05810 0.60 +0.4
73,947 - HMPREF1058_RS05810 0.68 -0.1
73,949 + HMPREF1058_RS05810 0.68 +0.4
73,949 + HMPREF1058_RS05810 0.68 +0.7
74,013 - HMPREF1058_RS05810 0.73 -0.4
74,048 + HMPREF1058_RS05810 0.76 -0.2
74,077 + HMPREF1058_RS05810 0.78 +1.4
74,077 + HMPREF1058_RS05810 0.78 +0.6
74,248 - -1.3
74,248 - -0.7
74,298 - -0.0
74,298 - -0.3
74,299 + +0.9
74,313 - +2.1
74,390 - -0.3
74,398 - -0.9
74,458 - -0.5
74,509 + -1.0
74,578 + -1.3
74,579 - +0.6
74,607 - -0.7
74,664 - -0.4
74,686 + -0.3
74,708 - +0.5
74,711 - -1.2
74,765 + HMPREF1058_RS05805 0.11 -1.1
74,766 - HMPREF1058_RS05805 0.11 -0.9
74,766 - HMPREF1058_RS05805 0.11 -2.4
74,766 - HMPREF1058_RS05805 0.11 +3.7
74,769 - HMPREF1058_RS05805 0.11 -0.6
74,873 - HMPREF1058_RS05805 0.15 -1.0
74,924 + HMPREF1058_RS05805 0.17 -1.4
74,925 - HMPREF1058_RS05805 0.17 -0.2
74,925 - HMPREF1058_RS05805 0.17 -1.0
74,977 + HMPREF1058_RS05805 0.20 -2.6
74,984 + HMPREF1058_RS05805 0.20 -0.6
74,985 - HMPREF1058_RS05805 0.20 -0.4
75,307 + HMPREF1058_RS05805 0.34 -1.4
75,332 - HMPREF1058_RS05805 0.35 -1.8
75,406 + HMPREF1058_RS05805 0.38 +0.4
75,579 - HMPREF1058_RS05805 0.46 +1.6
75,703 + HMPREF1058_RS05805 0.51 +0.0
75,772 + HMPREF1058_RS05805 0.54 +0.1
75,909 - HMPREF1058_RS05805 0.60 -1.4
75,938 - HMPREF1058_RS05805 0.62 +0.3
75,971 - HMPREF1058_RS05805 0.63 +0.1
76,018 + HMPREF1058_RS05805 0.65 -0.2
76,018 + HMPREF1058_RS05805 0.65 -0.4
76,123 + HMPREF1058_RS05805 0.70 -0.9
76,124 - HMPREF1058_RS05805 0.70 -1.1
76,181 + HMPREF1058_RS05805 0.72 -0.8
76,219 + HMPREF1058_RS05805 0.74 +2.1
76,253 + HMPREF1058_RS05805 0.75 +1.1
76,261 + -0.4
76,279 + HMPREF1058_RS05805 0.76 -0.6
76,462 - HMPREF1058_RS05805 0.84 -1.3
76,557 - HMPREF1058_RS05805 0.89 -1.6
76,557 - HMPREF1058_RS05805 0.89 -0.0
76,557 - HMPREF1058_RS05805 0.89 -0.7
76,712 + +0.3
76,749 - +0.9
76,749 - -0.3
76,818 + -0.1
76,819 - -0.2
76,879 + +0.7
76,926 - +1.3
76,927 + -0.1
76,927 + +0.4
76,928 - -1.6
76,933 + +0.0
76,955 + -0.6
76,955 + -0.4
76,955 + +1.8
76,955 + -0.3
76,956 - -0.9
76,956 - +0.1
76,956 - -0.2
76,956 - -0.7
76,977 + +0.1
77,046 + +0.3
77,047 - +0.1
77,054 + +2.1
77,055 - -2.0
77,144 - +0.2
77,157 - -0.2
77,194 - +1.1
77,210 - +0.3
77,256 + -0.1
77,277 + +0.1
77,278 - +0.2
77,323 - -0.7
77,414 - HMPREF1058_RS05800 0.24 -0.1
77,415 + HMPREF1058_RS05800 0.24 +0.3
77,423 - HMPREF1058_RS05800 0.25 +0.5
77,527 + HMPREF1058_RS05800 0.38 -0.3
77,813 + HMPREF1058_RS05800 0.75 +0.4

Or see this region's nucleotide sequence