Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS05775

Experiment: Mucin from porcine stomach type II 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mucin from porcine stomach type II 2.5 mg/ml (C)
81,776	-		HMPREF1058_RS05780	0.31	+0.8
81,822	-		HMPREF1058_RS05780	0.34	+0.8
81,849	+		HMPREF1058_RS05780	0.36	+0.4
81,880	-		HMPREF1058_RS05780	0.39	-1.0
81,899	+		HMPREF1058_RS05780	0.40	+0.8
81,945	+		HMPREF1058_RS05780	0.43	+0.2
81,946	-		HMPREF1058_RS05780	0.43	+2.1
81,946	-		HMPREF1058_RS05780	0.43	-1.4
82,018	+		HMPREF1058_RS05780	0.48	-0.4
82,050	-		HMPREF1058_RS05780	0.51	+0.7
82,056	+		HMPREF1058_RS05780	0.51	+0.4
82,057	-		HMPREF1058_RS05780	0.51	-0.7
82,059	+		HMPREF1058_RS05780	0.51	-0.1
82,059	+		HMPREF1058_RS05780	0.51	-0.1
82,060	-		HMPREF1058_RS05780	0.51	+0.1
82,113	+		HMPREF1058_RS05780	0.55	+2.0
82,153	+		HMPREF1058_RS05780	0.58	+0.2
82,154	-		HMPREF1058_RS05780	0.58	-0.2
82,185	+		HMPREF1058_RS05780	0.60	+0.9
82,186	-		HMPREF1058_RS05780	0.60	-0.3
82,191	+		HMPREF1058_RS05780	0.61	-0.3
82,191	+		HMPREF1058_RS05780	0.61	+1.0
82,191	+		HMPREF1058_RS05780	0.61	-0.8
82,191	+		HMPREF1058_RS05780	0.61	-3.4
82,262	+		HMPREF1058_RS05780	0.66	-1.3
82,267	-		HMPREF1058_RS05780	0.66	+0.6
82,314	-		HMPREF1058_RS05780	0.69	+2.1
82,365	-		HMPREF1058_RS05780	0.73	-0.4
82,422	+		HMPREF1058_RS05780	0.77	+1.1
82,468	+		HMPREF1058_RS05780	0.80	+0.0
82,603	-		HMPREF1058_RS05780	0.90	-0.1
82,603	-		HMPREF1058_RS05780	0.90	-0.8
82,667	+				-0.4
82,746	+				+2.1
82,747	-				+2.1
82,754	+				+0.1
82,755	-				+0.6
82,770	+				-0.4
82,810	-		HMPREF1058_RS05775	0.11	-1.0
82,810	-		HMPREF1058_RS05775	0.11	-1.6
82,810	-		HMPREF1058_RS05775	0.11	-1.0
82,874	+		HMPREF1058_RS05775	0.24	-1.0
82,874	+		HMPREF1058_RS05775	0.24	-0.1
82,874	+		HMPREF1058_RS05775	0.24	+0.5
82,875	-		HMPREF1058_RS05775	0.25	-0.7
82,875	-		HMPREF1058_RS05775	0.25	-0.4
82,885	+		HMPREF1058_RS05775	0.27	-1.5
82,975	-		HMPREF1058_RS05775	0.46	-2.3
83,018	+		HMPREF1058_RS05775	0.55	-0.0
83,019	-		HMPREF1058_RS05775	0.55	-1.5
83,024	-		HMPREF1058_RS05775	0.56	-0.8
83,025	+		HMPREF1058_RS05775	0.56	+0.4
83,166	+		HMPREF1058_RS05775	0.86	+1.6
83,167	-		HMPREF1058_RS05775	0.87	-1.7
83,167	-		HMPREF1058_RS05775	0.87	-1.1
83,244	-				-2.3
83,292	+				-1.5
83,293	-				-1.0
83,298	-				+0.3
83,359	+				-0.4
83,372	-				-3.3
83,391	-				-0.1
83,391	-				-1.6
83,409	+				-0.4
83,433	+				+1.2
83,434	-				-1.8
83,434	-				-0.5
83,437	-				-0.3
83,622	-		HMPREF1058_RS05770	0.25	+0.6
83,622	-		HMPREF1058_RS05770	0.25	+0.7
83,622	-				+0.6
83,622	-		HMPREF1058_RS05770	0.25	-1.5
83,624	-		HMPREF1058_RS05770	0.25	-0.9
83,662	-		HMPREF1058_RS05770	0.29	-0.2
83,662	-		HMPREF1058_RS05770	0.29	-0.5
83,737	-		HMPREF1058_RS05770	0.36	+0.1
83,767	+		HMPREF1058_RS05770	0.39	-1.5
83,767	+		HMPREF1058_RS05770	0.39	+0.8
83,814	+		HMPREF1058_RS05770	0.44	+0.3
83,915	-				+3.4
83,915	-		HMPREF1058_RS05770	0.54	-1.5
83,974	+		HMPREF1058_RS05770	0.60	-0.0
83,980	+		HMPREF1058_RS05770	0.61	+0.6
83,985	+		HMPREF1058_RS05770	0.61	-1.8
84,004	-		HMPREF1058_RS05770	0.63	-1.3
84,040	+		HMPREF1058_RS05770	0.67	-0.0
84,041	-		HMPREF1058_RS05770	0.67	-0.6
84,042	+		HMPREF1058_RS05770	0.67	+0.1
84,113	-		HMPREF1058_RS05770	0.74	-1.9
84,205	-		HMPREF1058_RS05770	0.83	-2.1