Experiment: Mucin from porcine stomach type II 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS05770 and HMPREF1058_RS05765 are separated by 193 nucleotides HMPREF1058_RS05765 and HMPREF1058_RS05760 are separated by 209 nucleotides HMPREF1058_RS05760 and HMPREF1058_RS05755 are separated by 13 nucleotides
HMPREF1058_RS05770: HMPREF1058_RS05770 - flotillin-like protein FloA, at 83,375 to 84,373
_RS05770
HMPREF1058_RS05765: HMPREF1058_RS05765 - nucleoside phosphorylase, at 84,567 to 85,445
_RS05765
HMPREF1058_RS05760: HMPREF1058_RS05760 - GAF domain-containing protein, at 85,655 to 86,140
_RS05760
HMPREF1058_RS05755: HMPREF1058_RS05755 - tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE, at 86,154 to 87,647
_RS05755
Position (kb) 84
85
86 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 83.622 kb on - strand, within HMPREF1058_RS05770 at 83.622 kb on - strand, within HMPREF1058_RS05770 at 83.622 kb on - strand at 83.622 kb on - strand, within HMPREF1058_RS05770 at 83.624 kb on - strand, within HMPREF1058_RS05770 at 83.662 kb on - strand, within HMPREF1058_RS05770 at 83.662 kb on - strand, within HMPREF1058_RS05770 at 83.737 kb on - strand, within HMPREF1058_RS05770 at 83.767 kb on + strand, within HMPREF1058_RS05770 at 83.767 kb on + strand, within HMPREF1058_RS05770 at 83.814 kb on + strand, within HMPREF1058_RS05770 at 83.915 kb on - strand at 83.915 kb on - strand, within HMPREF1058_RS05770 at 83.974 kb on + strand, within HMPREF1058_RS05770 at 83.980 kb on + strand, within HMPREF1058_RS05770 at 83.985 kb on + strand, within HMPREF1058_RS05770 at 84.004 kb on - strand, within HMPREF1058_RS05770 at 84.040 kb on + strand, within HMPREF1058_RS05770 at 84.041 kb on - strand, within HMPREF1058_RS05770 at 84.042 kb on + strand, within HMPREF1058_RS05770 at 84.113 kb on - strand, within HMPREF1058_RS05770 at 84.205 kb on - strand, within HMPREF1058_RS05770 at 84.265 kb on - strand, within HMPREF1058_RS05770 at 84.278 kb on + strand at 84.298 kb on - strand at 84.307 kb on + strand at 84.307 kb on + strand at 84.325 kb on + strand at 84.363 kb on + strand at 84.364 kb on - strand at 84.371 kb on + strand at 84.377 kb on + strand at 84.380 kb on + strand at 84.392 kb on - strand at 84.441 kb on + strand at 84.445 kb on - strand at 84.475 kb on + strand at 84.476 kb on - strand at 84.532 kb on - strand at 84.566 kb on + strand at 84.579 kb on + strand at 84.618 kb on - strand at 84.667 kb on + strand, within HMPREF1058_RS05765 at 84.668 kb on - strand, within HMPREF1058_RS05765 at 84.689 kb on - strand, within HMPREF1058_RS05765 at 84.694 kb on + strand, within HMPREF1058_RS05765 at 84.697 kb on + strand, within HMPREF1058_RS05765 at 84.697 kb on + strand, within HMPREF1058_RS05765 at 84.697 kb on + strand, within HMPREF1058_RS05765 at 84.731 kb on - strand, within HMPREF1058_RS05765 at 84.731 kb on - strand, within HMPREF1058_RS05765 at 84.731 kb on - strand, within HMPREF1058_RS05765 at 84.765 kb on + strand, within HMPREF1058_RS05765 at 84.765 kb on + strand, within HMPREF1058_RS05765 at 84.765 kb on + strand, within HMPREF1058_RS05765 at 84.766 kb on - strand, within HMPREF1058_RS05765 at 84.766 kb on - strand, within HMPREF1058_RS05765 at 84.768 kb on - strand, within HMPREF1058_RS05765 at 84.768 kb on - strand, within HMPREF1058_RS05765 at 84.787 kb on + strand, within HMPREF1058_RS05765 at 84.788 kb on - strand, within HMPREF1058_RS05765 at 84.802 kb on + strand, within HMPREF1058_RS05765 at 84.802 kb on + strand, within HMPREF1058_RS05765 at 84.815 kb on + strand, within HMPREF1058_RS05765 at 84.815 kb on + strand, within HMPREF1058_RS05765 at 84.815 kb on + strand, within HMPREF1058_RS05765 at 84.816 kb on - strand, within HMPREF1058_RS05765 at 84.818 kb on - strand, within HMPREF1058_RS05765 at 84.942 kb on - strand at 84.957 kb on + strand, within HMPREF1058_RS05765 at 84.958 kb on - strand, within HMPREF1058_RS05765 at 85.060 kb on - strand, within HMPREF1058_RS05765 at 85.076 kb on + strand, within HMPREF1058_RS05765 at 85.081 kb on + strand, within HMPREF1058_RS05765 at 85.081 kb on + strand, within HMPREF1058_RS05765 at 85.081 kb on + strand, within HMPREF1058_RS05765 at 85.081 kb on + strand, within HMPREF1058_RS05765 at 85.081 kb on + strand, within HMPREF1058_RS05765 at 85.082 kb on - strand, within HMPREF1058_RS05765 at 85.099 kb on - strand, within HMPREF1058_RS05765 at 85.162 kb on + strand, within HMPREF1058_RS05765 at 85.349 kb on - strand, within HMPREF1058_RS05765 at 85.349 kb on - strand, within HMPREF1058_RS05765 at 85.353 kb on - strand, within HMPREF1058_RS05765 at 85.444 kb on - strand at 85.444 kb on - strand at 85.455 kb on + strand at 85.463 kb on + strand at 85.467 kb on + strand at 85.468 kb on - strand at 85.468 kb on - strand at 85.468 kb on - strand at 85.596 kb on + strand at 85.639 kb on + strand at 85.649 kb on - strand at 85.685 kb on - strand at 85.693 kb on - strand at 85.731 kb on + strand, within HMPREF1058_RS05760 at 85.843 kb on + strand, within HMPREF1058_RS05760 at 85.902 kb on + strand, within HMPREF1058_RS05760 at 85.903 kb on - strand at 85.950 kb on + strand, within HMPREF1058_RS05760 at 85.969 kb on + strand, within HMPREF1058_RS05760 at 85.970 kb on - strand, within HMPREF1058_RS05760 at 86.011 kb on + strand, within HMPREF1058_RS05760 at 86.031 kb on + strand, within HMPREF1058_RS05760 at 86.057 kb on - strand, within HMPREF1058_RS05760 at 86.119 kb on - strand at 86.122 kb on + strand at 86.219 kb on - strand at 86.298 kb on + strand at 86.299 kb on - strand at 86.299 kb on - strand at 86.300 kb on + strand at 86.301 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mucin from porcine stomach type II 2.5 mg/ml (C) remove 83,622 - HMPREF1058_RS05770 0.25 +0.6 83,622 - HMPREF1058_RS05770 0.25 +0.7 83,622 - +0.6 83,622 - HMPREF1058_RS05770 0.25 -1.5 83,624 - HMPREF1058_RS05770 0.25 -0.9 83,662 - HMPREF1058_RS05770 0.29 -0.2 83,662 - HMPREF1058_RS05770 0.29 -0.5 83,737 - HMPREF1058_RS05770 0.36 +0.1 83,767 + HMPREF1058_RS05770 0.39 -1.5 83,767 + HMPREF1058_RS05770 0.39 +0.8 83,814 + HMPREF1058_RS05770 0.44 +0.3 83,915 - +3.4 83,915 - HMPREF1058_RS05770 0.54 -1.5 83,974 + HMPREF1058_RS05770 0.60 -0.0 83,980 + HMPREF1058_RS05770 0.61 +0.6 83,985 + HMPREF1058_RS05770 0.61 -1.8 84,004 - HMPREF1058_RS05770 0.63 -1.3 84,040 + HMPREF1058_RS05770 0.67 -0.0 84,041 - HMPREF1058_RS05770 0.67 -0.6 84,042 + HMPREF1058_RS05770 0.67 +0.1 84,113 - HMPREF1058_RS05770 0.74 -1.9 84,205 - HMPREF1058_RS05770 0.83 -2.1 84,265 - HMPREF1058_RS05770 0.89 -1.2 84,278 + -0.0 84,298 - -3.3 84,307 + +0.6 84,307 + -0.2 84,325 + -1.6 84,363 + -0.7 84,364 - -0.5 84,371 + -0.4 84,377 + +0.6 84,380 + +1.1 84,392 - +0.4 84,441 + +0.2 84,445 - -1.3 84,475 + +0.6 84,476 - -0.6 84,532 - -0.7 84,566 + -0.3 84,579 + -1.9 84,618 - -1.9 84,667 + HMPREF1058_RS05765 0.11 -0.8 84,668 - HMPREF1058_RS05765 0.11 -1.9 84,689 - HMPREF1058_RS05765 0.14 -2.6 84,694 + HMPREF1058_RS05765 0.14 +0.3 84,697 + HMPREF1058_RS05765 0.15 +0.5 84,697 + HMPREF1058_RS05765 0.15 +2.1 84,697 + HMPREF1058_RS05765 0.15 -1.3 84,731 - HMPREF1058_RS05765 0.19 -1.0 84,731 - HMPREF1058_RS05765 0.19 -2.1 84,731 - HMPREF1058_RS05765 0.19 -0.3 84,765 + HMPREF1058_RS05765 0.23 -0.9 84,765 + HMPREF1058_RS05765 0.23 -1.2 84,765 + HMPREF1058_RS05765 0.23 -1.2 84,766 - HMPREF1058_RS05765 0.23 -2.4 84,766 - HMPREF1058_RS05765 0.23 -2.8 84,768 - HMPREF1058_RS05765 0.23 -1.4 84,768 - HMPREF1058_RS05765 0.23 +0.1 84,787 + HMPREF1058_RS05765 0.25 -1.4 84,788 - HMPREF1058_RS05765 0.25 +0.1 84,802 + HMPREF1058_RS05765 0.27 -0.9 84,802 + HMPREF1058_RS05765 0.27 -0.7 84,815 + HMPREF1058_RS05765 0.28 +0.9 84,815 + HMPREF1058_RS05765 0.28 +0.7 84,815 + HMPREF1058_RS05765 0.28 -0.2 84,816 - HMPREF1058_RS05765 0.28 +0.1 84,818 - HMPREF1058_RS05765 0.29 -0.6 84,942 - +1.1 84,957 + HMPREF1058_RS05765 0.44 -0.5 84,958 - HMPREF1058_RS05765 0.44 -0.4 85,060 - HMPREF1058_RS05765 0.56 -0.9 85,076 + HMPREF1058_RS05765 0.58 -1.0 85,081 + HMPREF1058_RS05765 0.58 -0.7 85,081 + HMPREF1058_RS05765 0.58 -0.8 85,081 + HMPREF1058_RS05765 0.58 -0.4 85,081 + HMPREF1058_RS05765 0.58 -0.9 85,081 + HMPREF1058_RS05765 0.58 -1.8 85,082 - HMPREF1058_RS05765 0.59 -2.3 85,099 - HMPREF1058_RS05765 0.61 +0.3 85,162 + HMPREF1058_RS05765 0.68 -1.2 85,349 - HMPREF1058_RS05765 0.89 -0.3 85,349 - HMPREF1058_RS05765 0.89 -1.6 85,353 - HMPREF1058_RS05765 0.89 +0.5 85,444 - -1.8 85,444 - +0.4 85,455 + -0.9 85,463 + -0.7 85,467 + +1.5 85,468 - +0.5 85,468 - +0.3 85,468 - -0.8 85,596 + -1.2 85,639 + +0.2 85,649 - +3.1 85,685 - +1.0 85,693 - +1.1 85,731 + HMPREF1058_RS05760 0.16 +0.5 85,843 + HMPREF1058_RS05760 0.39 -0.6 85,902 + HMPREF1058_RS05760 0.51 +0.5 85,903 - -0.7 85,950 + HMPREF1058_RS05760 0.61 +0.1 85,969 + HMPREF1058_RS05760 0.65 -0.3 85,970 - HMPREF1058_RS05760 0.65 +0.0 86,011 + HMPREF1058_RS05760 0.73 -0.2 86,031 + HMPREF1058_RS05760 0.77 +0.2 86,057 - HMPREF1058_RS05760 0.83 -0.2 86,119 - +0.6 86,122 + +0.2 86,219 - +0.3 86,298 + -0.4 86,299 - -0.6 86,299 - +0.1 86,300 + -0.2 86,301 - -0.6
Or see this region's nucleotide sequence