Experiment: Mucin from porcine stomach type II 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS05080 and HMPREF1058_RS05075 are separated by 12 nucleotides HMPREF1058_RS05075 and HMPREF1058_RS05070 are separated by 150 nucleotides HMPREF1058_RS05070 and HMPREF1058_RS05065 are separated by 22 nucleotides
HMPREF1058_RS05080: HMPREF1058_RS05080 - hypothetical protein, at 251,373 to 252,323
_RS05080
HMPREF1058_RS05075: HMPREF1058_RS05075 - hypothetical protein, at 252,336 to 252,821
_RS05075
HMPREF1058_RS05070: HMPREF1058_RS05070 - hypothetical protein, at 252,972 to 253,466
_RS05070
HMPREF1058_RS05065: HMPREF1058_RS05065 - WG repeat-containing protein, at 253,489 to 255,183
_RS05065
Position (kb) 252
253
254 Strain fitness (log2 ratio) -2
-1
0
1
2 at 252.174 kb on - strand, within HMPREF1058_RS05080 at 252.283 kb on - strand at 252.300 kb on + strand at 252.305 kb on + strand at 252.306 kb on - strand at 252.310 kb on + strand at 252.471 kb on + strand, within HMPREF1058_RS05075 at 252.471 kb on + strand, within HMPREF1058_RS05075 at 252.472 kb on - strand, within HMPREF1058_RS05075 at 252.472 kb on - strand, within HMPREF1058_RS05075 at 252.476 kb on - strand, within HMPREF1058_RS05075 at 252.517 kb on + strand, within HMPREF1058_RS05075 at 252.642 kb on - strand, within HMPREF1058_RS05075 at 252.921 kb on + strand at 252.964 kb on + strand at 252.964 kb on + strand at 252.964 kb on + strand at 252.964 kb on + strand at 252.964 kb on + strand at 252.964 kb on + strand at 252.965 kb on - strand at 252.965 kb on - strand at 252.965 kb on - strand at 252.968 kb on + strand at 252.968 kb on + strand at 252.987 kb on + strand at 252.996 kb on - strand at 252.996 kb on - strand at 253.127 kb on - strand, within HMPREF1058_RS05070 at 253.127 kb on - strand, within HMPREF1058_RS05070 at 253.187 kb on + strand, within HMPREF1058_RS05070 at 253.248 kb on + strand, within HMPREF1058_RS05070 at 253.332 kb on - strand, within HMPREF1058_RS05070 at 253.345 kb on - strand, within HMPREF1058_RS05070 at 253.345 kb on - strand, within HMPREF1058_RS05070 at 253.427 kb on + strand at 253.427 kb on + strand at 253.436 kb on + strand at 253.483 kb on + strand at 253.484 kb on - strand at 253.485 kb on + strand at 253.486 kb on - strand at 253.488 kb on - strand at 253.551 kb on - strand at 253.603 kb on + strand at 253.604 kb on - strand at 253.604 kb on - strand at 253.610 kb on + strand at 253.632 kb on + strand at 253.647 kb on + strand at 253.648 kb on - strand at 253.654 kb on - strand at 253.654 kb on - strand at 253.678 kb on + strand, within HMPREF1058_RS05065 at 253.678 kb on + strand, within HMPREF1058_RS05065 at 253.747 kb on - strand, within HMPREF1058_RS05065 at 253.765 kb on - strand, within HMPREF1058_RS05065 at 253.796 kb on + strand, within HMPREF1058_RS05065 at 253.859 kb on - strand at 253.919 kb on + strand, within HMPREF1058_RS05065 at 253.953 kb on - strand, within HMPREF1058_RS05065 at 254.094 kb on + strand, within HMPREF1058_RS05065 at 254.152 kb on - strand, within HMPREF1058_RS05065 at 254.155 kb on + strand, within HMPREF1058_RS05065 at 254.155 kb on + strand, within HMPREF1058_RS05065 at 254.156 kb on - strand, within HMPREF1058_RS05065 at 254.156 kb on - strand, within HMPREF1058_RS05065 at 254.157 kb on + strand, within HMPREF1058_RS05065 at 254.180 kb on - strand, within HMPREF1058_RS05065 at 254.196 kb on + strand, within HMPREF1058_RS05065 at 254.200 kb on - strand, within HMPREF1058_RS05065 at 254.200 kb on - strand at 254.201 kb on + strand, within HMPREF1058_RS05065 at 254.201 kb on + strand, within HMPREF1058_RS05065 at 254.201 kb on + strand at 254.201 kb on + strand, within HMPREF1058_RS05065 at 254.253 kb on - strand, within HMPREF1058_RS05065 at 254.283 kb on + strand, within HMPREF1058_RS05065 at 254.283 kb on + strand, within HMPREF1058_RS05065 at 254.283 kb on - strand, within HMPREF1058_RS05065 at 254.286 kb on + strand, within HMPREF1058_RS05065 at 254.294 kb on + strand, within HMPREF1058_RS05065 at 254.294 kb on + strand, within HMPREF1058_RS05065 at 254.295 kb on - strand, within HMPREF1058_RS05065 at 254.296 kb on + strand, within HMPREF1058_RS05065 at 254.296 kb on + strand, within HMPREF1058_RS05065 at 254.297 kb on - strand, within HMPREF1058_RS05065 at 254.353 kb on + strand, within HMPREF1058_RS05065 at 254.356 kb on + strand, within HMPREF1058_RS05065 at 254.358 kb on + strand, within HMPREF1058_RS05065 at 254.359 kb on - strand, within HMPREF1058_RS05065 at 254.359 kb on - strand, within HMPREF1058_RS05065 at 254.359 kb on - strand, within HMPREF1058_RS05065 at 254.377 kb on - strand, within HMPREF1058_RS05065 at 254.401 kb on + strand, within HMPREF1058_RS05065 at 254.415 kb on + strand, within HMPREF1058_RS05065
Per-strain Table
Position Strand Gene LocusTag Fraction Mucin from porcine stomach type II 2.5 mg/ml (C) remove 252,174 - HMPREF1058_RS05080 0.84 -0.7 252,283 - -0.4 252,300 + -0.7 252,305 + -0.0 252,306 - -0.0 252,310 + -0.8 252,471 + HMPREF1058_RS05075 0.28 -0.1 252,471 + HMPREF1058_RS05075 0.28 +0.1 252,472 - HMPREF1058_RS05075 0.28 -0.5 252,472 - HMPREF1058_RS05075 0.28 +2.1 252,476 - HMPREF1058_RS05075 0.29 -1.3 252,517 + HMPREF1058_RS05075 0.37 +0.7 252,642 - HMPREF1058_RS05075 0.63 -0.0 252,921 + +0.1 252,964 + +1.1 252,964 + -0.7 252,964 + +1.1 252,964 + +0.4 252,964 + -0.2 252,964 + -1.1 252,965 - -0.1 252,965 - +1.4 252,965 - +0.6 252,968 + +0.4 252,968 + -0.4 252,987 + +1.1 252,996 - +1.0 252,996 - +0.4 253,127 - HMPREF1058_RS05070 0.31 -0.4 253,127 - HMPREF1058_RS05070 0.31 -0.7 253,187 + HMPREF1058_RS05070 0.43 -0.8 253,248 + HMPREF1058_RS05070 0.56 -1.4 253,332 - HMPREF1058_RS05070 0.73 -0.8 253,345 - HMPREF1058_RS05070 0.75 +0.3 253,345 - HMPREF1058_RS05070 0.75 +0.0 253,427 + -0.0 253,427 + -0.7 253,436 + -1.2 253,483 + -0.0 253,484 - -0.7 253,485 + -0.0 253,486 - +0.1 253,488 - +0.4 253,551 - +1.9 253,603 + -0.8 253,604 - +0.6 253,604 - +0.3 253,610 + -0.4 253,632 + +0.5 253,647 + -0.1 253,648 - -0.2 253,654 - -0.3 253,654 - +0.3 253,678 + HMPREF1058_RS05065 0.11 -0.9 253,678 + HMPREF1058_RS05065 0.11 +1.1 253,747 - HMPREF1058_RS05065 0.15 +1.5 253,765 - HMPREF1058_RS05065 0.16 +1.4 253,796 + HMPREF1058_RS05065 0.18 +0.5 253,859 - -0.7 253,919 + HMPREF1058_RS05065 0.25 +0.7 253,953 - HMPREF1058_RS05065 0.27 -1.9 254,094 + HMPREF1058_RS05065 0.36 +0.1 254,152 - HMPREF1058_RS05065 0.39 -0.5 254,155 + HMPREF1058_RS05065 0.39 -0.9 254,155 + HMPREF1058_RS05065 0.39 +0.5 254,156 - HMPREF1058_RS05065 0.39 +0.3 254,156 - HMPREF1058_RS05065 0.39 -1.2 254,157 + HMPREF1058_RS05065 0.39 -0.8 254,180 - HMPREF1058_RS05065 0.41 -0.8 254,196 + HMPREF1058_RS05065 0.42 -0.1 254,200 - HMPREF1058_RS05065 0.42 +1.7 254,200 - -1.2 254,201 + HMPREF1058_RS05065 0.42 +1.3 254,201 + HMPREF1058_RS05065 0.42 -0.9 254,201 + -0.2 254,201 + HMPREF1058_RS05065 0.42 -0.0 254,253 - HMPREF1058_RS05065 0.45 +0.4 254,283 + HMPREF1058_RS05065 0.47 -1.8 254,283 + HMPREF1058_RS05065 0.47 -1.2 254,283 - HMPREF1058_RS05065 0.47 -1.0 254,286 + HMPREF1058_RS05065 0.47 -0.6 254,294 + HMPREF1058_RS05065 0.47 -1.0 254,294 + HMPREF1058_RS05065 0.47 +0.1 254,295 - HMPREF1058_RS05065 0.48 -0.9 254,296 + HMPREF1058_RS05065 0.48 -0.1 254,296 + HMPREF1058_RS05065 0.48 -0.2 254,297 - HMPREF1058_RS05065 0.48 -1.2 254,353 + HMPREF1058_RS05065 0.51 +0.3 254,356 + HMPREF1058_RS05065 0.51 -0.4 254,358 + HMPREF1058_RS05065 0.51 -0.6 254,359 - HMPREF1058_RS05065 0.51 -1.0 254,359 - HMPREF1058_RS05065 0.51 +0.9 254,359 - HMPREF1058_RS05065 0.51 +2.5 254,377 - HMPREF1058_RS05065 0.52 +1.3 254,401 + HMPREF1058_RS05065 0.54 +0.7 254,415 + HMPREF1058_RS05065 0.55 +0.5
Or see this region's nucleotide sequence