Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS05005

Experiment: Mucin from porcine stomach type II 2.5 mg/ml (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS05015 and HMPREF1058_RS05010 are separated by 147 nucleotidesHMPREF1058_RS05010 and HMPREF1058_RS05005 are separated by 133 nucleotidesHMPREF1058_RS05005 and HMPREF1058_RS05000 are separated by 77 nucleotides HMPREF1058_RS05015: HMPREF1058_RS05015 - twin-arginine translocase TatA/TatE family subunit, at 268,207 to 268,410 _RS05015 HMPREF1058_RS05010: HMPREF1058_RS05010 - hypothetical protein, at 268,558 to 269,067 _RS05010 HMPREF1058_RS05005: HMPREF1058_RS05005 - hypothetical protein, at 269,201 to 269,683 _RS05005 HMPREF1058_RS05000: HMPREF1058_RS05000 - DUF4010 domain-containing protein, at 269,761 to 271,050 _RS05000 Position (kb) 269 270Strain fitness (log2 ratio) -2 -1 0 1 2 3at 268.230 kb on + strandat 268.243 kb on + strand, within HMPREF1058_RS05015at 268.243 kb on + strand, within HMPREF1058_RS05015at 268.244 kb on - strand, within HMPREF1058_RS05015at 268.367 kb on - strand, within HMPREF1058_RS05015at 268.367 kb on - strand, within HMPREF1058_RS05015at 268.421 kb on - strandat 268.421 kb on - strandat 268.679 kb on - strand, within HMPREF1058_RS05010at 268.734 kb on + strand, within HMPREF1058_RS05010at 268.758 kb on + strand, within HMPREF1058_RS05010at 268.759 kb on - strand, within HMPREF1058_RS05010at 268.760 kb on + strand, within HMPREF1058_RS05010at 268.792 kb on + strand, within HMPREF1058_RS05010at 268.793 kb on - strand, within HMPREF1058_RS05010at 268.800 kb on + strand, within HMPREF1058_RS05010at 268.801 kb on - strand, within HMPREF1058_RS05010at 268.811 kb on - strand, within HMPREF1058_RS05010at 268.842 kb on + strand, within HMPREF1058_RS05010at 268.892 kb on + strand, within HMPREF1058_RS05010at 268.896 kb on + strand, within HMPREF1058_RS05010at 268.897 kb on - strand, within HMPREF1058_RS05010at 268.897 kb on - strand, within HMPREF1058_RS05010at 268.899 kb on - strand, within HMPREF1058_RS05010at 268.906 kb on + strand, within HMPREF1058_RS05010at 268.910 kb on - strandat 268.935 kb on + strand, within HMPREF1058_RS05010at 268.935 kb on + strand, within HMPREF1058_RS05010at 268.987 kb on - strand, within HMPREF1058_RS05010at 269.072 kb on - strandat 269.072 kb on - strandat 269.072 kb on - strandat 269.086 kb on + strandat 269.087 kb on - strandat 269.087 kb on - strandat 269.099 kb on + strandat 269.112 kb on + strandat 269.169 kb on + strandat 269.294 kb on + strand, within HMPREF1058_RS05005at 269.513 kb on - strand, within HMPREF1058_RS05005at 269.517 kb on + strand, within HMPREF1058_RS05005at 269.517 kb on + strand, within HMPREF1058_RS05005at 269.555 kb on - strand, within HMPREF1058_RS05005at 269.745 kb on + strandat 269.799 kb on + strandat 269.908 kb on - strand, within HMPREF1058_RS05000at 269.940 kb on + strand, within HMPREF1058_RS05000at 269.942 kb on + strand, within HMPREF1058_RS05000at 269.943 kb on - strand, within HMPREF1058_RS05000at 269.943 kb on - strand, within HMPREF1058_RS05000at 269.953 kb on - strand, within HMPREF1058_RS05000at 269.967 kb on - strand, within HMPREF1058_RS05000at 269.994 kb on + strand, within HMPREF1058_RS05000at 270.013 kb on + strand, within HMPREF1058_RS05000at 270.013 kb on + strand, within HMPREF1058_RS05000at 270.014 kb on - strand, within HMPREF1058_RS05000at 270.016 kb on + strand, within HMPREF1058_RS05000at 270.080 kb on - strand, within HMPREF1058_RS05000at 270.084 kb on + strand, within HMPREF1058_RS05000at 270.102 kb on + strand, within HMPREF1058_RS05000at 270.102 kb on + strand, within HMPREF1058_RS05000at 270.102 kb on + strand, within HMPREF1058_RS05000at 270.185 kb on + strand, within HMPREF1058_RS05000at 270.186 kb on - strand, within HMPREF1058_RS05000at 270.344 kb on - strand, within HMPREF1058_RS05000at 270.418 kb on + strand, within HMPREF1058_RS05000at 270.419 kb on - strand, within HMPREF1058_RS05000at 270.490 kb on + strand, within HMPREF1058_RS05000at 270.491 kb on - strand, within HMPREF1058_RS05000at 270.495 kb on - strand, within HMPREF1058_RS05000at 270.552 kb on + strand, within HMPREF1058_RS05000at 270.555 kb on - strand, within HMPREF1058_RS05000at 270.630 kb on - strand, within HMPREF1058_RS05000at 270.648 kb on + strand, within HMPREF1058_RS05000at 270.648 kb on + strand, within HMPREF1058_RS05000at 270.651 kb on + strand, within HMPREF1058_RS05000at 270.652 kb on - strand, within HMPREF1058_RS05000at 270.654 kb on - strand, within HMPREF1058_RS05000

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Per-strain Table

Position Strand Gene LocusTag Fraction Mucin from porcine stomach type II 2.5 mg/ml (C)
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268,230 + +1.1
268,243 + HMPREF1058_RS05015 0.18 +1.0
268,243 + HMPREF1058_RS05015 0.18 +0.8
268,244 - HMPREF1058_RS05015 0.18 +0.4
268,367 - HMPREF1058_RS05015 0.78 +0.3
268,367 - HMPREF1058_RS05015 0.78 +3.1
268,421 - +0.9
268,421 - +0.6
268,679 - HMPREF1058_RS05010 0.24 -0.6
268,734 + HMPREF1058_RS05010 0.35 +0.6
268,758 + HMPREF1058_RS05010 0.39 +1.3
268,759 - HMPREF1058_RS05010 0.39 +0.1
268,760 + HMPREF1058_RS05010 0.40 +0.5
268,792 + HMPREF1058_RS05010 0.46 +0.4
268,793 - HMPREF1058_RS05010 0.46 +0.3
268,800 + HMPREF1058_RS05010 0.47 +2.1
268,801 - HMPREF1058_RS05010 0.48 -0.3
268,811 - HMPREF1058_RS05010 0.50 -0.3
268,842 + HMPREF1058_RS05010 0.56 +0.4
268,892 + HMPREF1058_RS05010 0.65 +0.6
268,896 + HMPREF1058_RS05010 0.66 +0.5
268,897 - HMPREF1058_RS05010 0.66 +0.1
268,897 - HMPREF1058_RS05010 0.66 -0.3
268,899 - HMPREF1058_RS05010 0.67 +0.1
268,906 + HMPREF1058_RS05010 0.68 -0.4
268,910 - +0.8
268,935 + HMPREF1058_RS05010 0.74 +0.5
268,935 + HMPREF1058_RS05010 0.74 -0.2
268,987 - HMPREF1058_RS05010 0.84 -0.9
269,072 - -0.3
269,072 - -0.3
269,072 - -0.5
269,086 + -0.9
269,087 - -0.6
269,087 - +0.9
269,099 + +0.1
269,112 + -0.2
269,169 + -1.4
269,294 + HMPREF1058_RS05005 0.19 +0.3
269,513 - HMPREF1058_RS05005 0.65 -2.5
269,517 + HMPREF1058_RS05005 0.65 -1.1
269,517 + HMPREF1058_RS05005 0.65 +1.1
269,555 - HMPREF1058_RS05005 0.73 -1.1
269,745 + +0.1
269,799 + -0.1
269,908 - HMPREF1058_RS05000 0.11 -1.7
269,940 + HMPREF1058_RS05000 0.14 +0.6
269,942 + HMPREF1058_RS05000 0.14 +0.6
269,943 - HMPREF1058_RS05000 0.14 -0.9
269,943 - HMPREF1058_RS05000 0.14 +0.2
269,953 - HMPREF1058_RS05000 0.15 +0.1
269,967 - HMPREF1058_RS05000 0.16 -1.6
269,994 + HMPREF1058_RS05000 0.18 -0.3
270,013 + HMPREF1058_RS05000 0.20 -1.2
270,013 + HMPREF1058_RS05000 0.20 -0.1
270,014 - HMPREF1058_RS05000 0.20 +0.1
270,016 + HMPREF1058_RS05000 0.20 +1.1
270,080 - HMPREF1058_RS05000 0.25 +0.2
270,084 + HMPREF1058_RS05000 0.25 -0.6
270,102 + HMPREF1058_RS05000 0.26 -0.7
270,102 + HMPREF1058_RS05000 0.26 -0.5
270,102 + HMPREF1058_RS05000 0.26 -0.7
270,185 + HMPREF1058_RS05000 0.33 +0.6
270,186 - HMPREF1058_RS05000 0.33 +1.0
270,344 - HMPREF1058_RS05000 0.45 +0.3
270,418 + HMPREF1058_RS05000 0.51 +1.7
270,419 - HMPREF1058_RS05000 0.51 +2.6
270,490 + HMPREF1058_RS05000 0.57 -1.0
270,491 - HMPREF1058_RS05000 0.57 -0.3
270,495 - HMPREF1058_RS05000 0.57 -1.8
270,552 + HMPREF1058_RS05000 0.61 +0.1
270,555 - HMPREF1058_RS05000 0.62 +0.6
270,630 - HMPREF1058_RS05000 0.67 +0.4
270,648 + HMPREF1058_RS05000 0.69 -1.0
270,648 + HMPREF1058_RS05000 0.69 -0.4
270,651 + HMPREF1058_RS05000 0.69 -1.2
270,652 - HMPREF1058_RS05000 0.69 +0.2
270,654 - HMPREF1058_RS05000 0.69 +1.7

Or see this region's nucleotide sequence