Experiment: Mucin from porcine stomach type II 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS04955 and HMPREF1058_RS04950 are separated by 15 nucleotides HMPREF1058_RS04950 and HMPREF1058_RS04945 are separated by 142 nucleotides
HMPREF1058_RS04955: HMPREF1058_RS04955 - site-specific integrase, at 284,201 to 285,436
_RS04955
HMPREF1058_RS04950: HMPREF1058_RS04950 - hypothetical protein, at 285,452 to 285,766
_RS04950
HMPREF1058_RS04945: HMPREF1058_RS04945 - hypothetical protein, at 285,909 to 287,006
_RS04945
Position (kb) 285
286 Strain fitness (log2 ratio) -2
-1
0
1
2 at 284.465 kb on + strand, within HMPREF1058_RS04955 at 284.466 kb on - strand, within HMPREF1058_RS04955 at 284.466 kb on - strand, within HMPREF1058_RS04955 at 284.466 kb on - strand, within HMPREF1058_RS04955 at 284.521 kb on + strand, within HMPREF1058_RS04955 at 284.610 kb on - strand, within HMPREF1058_RS04955 at 284.621 kb on + strand, within HMPREF1058_RS04955 at 285.120 kb on - strand, within HMPREF1058_RS04955 at 285.435 kb on - strand at 285.618 kb on + strand, within HMPREF1058_RS04950 at 285.708 kb on - strand, within HMPREF1058_RS04950 at 285.762 kb on + strand at 285.869 kb on - strand at 285.888 kb on - strand at 285.909 kb on - strand at 286.105 kb on - strand, within HMPREF1058_RS04945 at 286.105 kb on - strand, within HMPREF1058_RS04945 at 286.156 kb on - strand, within HMPREF1058_RS04945 at 286.156 kb on - strand, within HMPREF1058_RS04945 at 286.189 kb on - strand, within HMPREF1058_RS04945 at 286.225 kb on - strand, within HMPREF1058_RS04945 at 286.299 kb on + strand, within HMPREF1058_RS04945 at 286.441 kb on - strand, within HMPREF1058_RS04945 at 286.476 kb on + strand, within HMPREF1058_RS04945 at 286.477 kb on - strand, within HMPREF1058_RS04945 at 286.522 kb on - strand, within HMPREF1058_RS04945 at 286.626 kb on + strand, within HMPREF1058_RS04945 at 286.695 kb on + strand, within HMPREF1058_RS04945 at 286.737 kb on + strand, within HMPREF1058_RS04945
Per-strain Table
Position Strand Gene LocusTag Fraction Mucin from porcine stomach type II 2.5 mg/ml (C) remove 284,465 + HMPREF1058_RS04955 0.21 +0.6 284,466 - HMPREF1058_RS04955 0.21 +0.4 284,466 - HMPREF1058_RS04955 0.21 -0.6 284,466 - HMPREF1058_RS04955 0.21 +1.8 284,521 + HMPREF1058_RS04955 0.26 -0.7 284,610 - HMPREF1058_RS04955 0.33 -0.8 284,621 + HMPREF1058_RS04955 0.34 -0.2 285,120 - HMPREF1058_RS04955 0.74 -0.5 285,435 - +0.1 285,618 + HMPREF1058_RS04950 0.53 -0.7 285,708 - HMPREF1058_RS04950 0.81 -0.6 285,762 + -2.6 285,869 - -1.4 285,888 - -0.7 285,909 - -0.7 286,105 - HMPREF1058_RS04945 0.18 -0.4 286,105 - HMPREF1058_RS04945 0.18 -1.6 286,156 - HMPREF1058_RS04945 0.22 -0.9 286,156 - HMPREF1058_RS04945 0.22 -2.2 286,189 - HMPREF1058_RS04945 0.26 -2.1 286,225 - HMPREF1058_RS04945 0.29 +0.4 286,299 + HMPREF1058_RS04945 0.36 -1.1 286,441 - HMPREF1058_RS04945 0.48 +1.3 286,476 + HMPREF1058_RS04945 0.52 +0.7 286,477 - HMPREF1058_RS04945 0.52 -0.3 286,522 - HMPREF1058_RS04945 0.56 -0.3 286,626 + HMPREF1058_RS04945 0.65 +1.3 286,695 + HMPREF1058_RS04945 0.72 -0.0 286,737 + HMPREF1058_RS04945 0.75 +0.9
Or see this region's nucleotide sequence