Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS04740

Experiment: Mucin from porcine stomach type II 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mucin from porcine stomach type II 2.5 mg/ml (C)
324,686	-				+0.3
324,728	+				+1.1
324,943	+		HMPREF1058_RS21660	0.26	+1.7
324,943	+		HMPREF1058_RS21660	0.26	+0.1
324,944	-		HMPREF1058_RS21660	0.27	-0.9
324,972	-		HMPREF1058_RS21660	0.37	+0.5
325,171	-				+0.7
325,172	+				+0.4
325,173	-				+0.0
325,173	-				+0.1
325,189	+				+0.7
325,237	+				-0.4
325,238	-				+0.1
325,243	+				+0.7
325,244	-				-1.1
325,299	+				+0.2
325,326	+				-1.2
325,399	+		HMPREF1058_RS04740	0.15	-1.0
325,399	+		HMPREF1058_RS04740	0.15	+0.3
325,418	-		HMPREF1058_RS04740	0.19	-0.5
325,423	-				+0.3
325,473	+		HMPREF1058_RS04740	0.32	-1.6
325,473	+		HMPREF1058_RS04740	0.32	-0.7
325,498	-		HMPREF1058_RS04740	0.37	+0.1
325,498	-		HMPREF1058_RS04740	0.37	-1.3
325,529	-		HMPREF1058_RS04740	0.44	-0.7
325,530	+		HMPREF1058_RS04740	0.44	+0.0
325,614	+		HMPREF1058_RS04740	0.63	+0.6
325,614	+		HMPREF1058_RS04740	0.63	-1.7
325,615	-		HMPREF1058_RS04740	0.64	-1.9
325,619	-		HMPREF1058_RS04740	0.65	-1.2
325,619	-		HMPREF1058_RS04740	0.65	-0.5
325,732	-				+0.3
325,732	-				-0.9
325,733	+				-0.0
325,774	+				-0.3
325,777	+				-1.1
325,787	+				-0.7
325,788	-				-0.8
325,875	-				-0.6
325,875	-				+0.4
326,727	-		HMPREF1058_RS04730	0.29	+0.1