Experiment: Mucin from porcine stomach type II 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS04060 and HMPREF1058_RS04055 are separated by 9 nucleotides HMPREF1058_RS04055 and HMPREF1058_RS04050 are separated by 39 nucleotides HMPREF1058_RS04050 and HMPREF1058_RS04045 are separated by 19 nucleotides HMPREF1058_RS04045 and HMPREF1058_RS04040 are separated by 10 nucleotides
HMPREF1058_RS04060: HMPREF1058_RS04060 - VWA domain-containing protein, at 124,244 to 125,266
_RS04060
HMPREF1058_RS04055: HMPREF1058_RS04055 - tetratricopeptide repeat protein, at 125,276 to 125,983
_RS04055
HMPREF1058_RS04050: HMPREF1058_RS04050 - protein BatD, at 126,023 to 127,858
_RS04050
HMPREF1058_RS04045: HMPREF1058_RS04045 - tetratricopeptide repeat protein, at 127,878 to 128,696
_RS04045
HMPREF1058_RS04040: HMPREF1058_RS04040 - phosphatase PAP2 family protein, at 128,707 to 129,414
_RS04040
Position (kb) 126
127
128 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 125.256 kb on + strand at 125.264 kb on + strand at 125.275 kb on + strand at 125.292 kb on - strand at 125.292 kb on - strand at 125.310 kb on + strand at 125.378 kb on + strand, within HMPREF1058_RS04055 at 126.002 kb on + strand at 126.049 kb on - strand at 126.118 kb on - strand at 126.151 kb on + strand at 126.245 kb on - strand, within HMPREF1058_RS04050 at 126.292 kb on + strand, within HMPREF1058_RS04050 at 126.344 kb on - strand, within HMPREF1058_RS04050 at 126.396 kb on + strand, within HMPREF1058_RS04050 at 126.505 kb on + strand, within HMPREF1058_RS04050 at 126.529 kb on + strand, within HMPREF1058_RS04050 at 126.563 kb on + strand, within HMPREF1058_RS04050 at 126.563 kb on + strand, within HMPREF1058_RS04050 at 126.564 kb on - strand, within HMPREF1058_RS04050 at 126.574 kb on + strand, within HMPREF1058_RS04050 at 126.633 kb on + strand, within HMPREF1058_RS04050 at 126.838 kb on + strand, within HMPREF1058_RS04050 at 126.842 kb on + strand, within HMPREF1058_RS04050 at 126.946 kb on + strand, within HMPREF1058_RS04050 at 126.963 kb on + strand, within HMPREF1058_RS04050 at 127.082 kb on + strand, within HMPREF1058_RS04050 at 127.229 kb on - strand, within HMPREF1058_RS04050 at 127.232 kb on + strand, within HMPREF1058_RS04050 at 127.232 kb on + strand, within HMPREF1058_RS04050 at 127.233 kb on - strand, within HMPREF1058_RS04050 at 127.234 kb on + strand, within HMPREF1058_RS04050 at 127.235 kb on - strand, within HMPREF1058_RS04050 at 127.257 kb on - strand, within HMPREF1058_RS04050 at 127.418 kb on + strand, within HMPREF1058_RS04050 at 127.419 kb on - strand, within HMPREF1058_RS04050 at 127.419 kb on - strand, within HMPREF1058_RS04050 at 127.433 kb on - strand, within HMPREF1058_RS04050 at 127.598 kb on + strand, within HMPREF1058_RS04050 at 127.599 kb on - strand, within HMPREF1058_RS04050 at 127.676 kb on - strand at 127.792 kb on + strand at 127.847 kb on - strand at 127.849 kb on - strand at 127.929 kb on + strand at 127.929 kb on + strand at 128.070 kb on + strand, within HMPREF1058_RS04045 at 128.071 kb on - strand, within HMPREF1058_RS04045 at 128.078 kb on + strand, within HMPREF1058_RS04045 at 128.078 kb on + strand, within HMPREF1058_RS04045 at 128.133 kb on + strand, within HMPREF1058_RS04045 at 128.172 kb on + strand, within HMPREF1058_RS04045 at 128.172 kb on + strand, within HMPREF1058_RS04045 at 128.257 kb on + strand, within HMPREF1058_RS04045 at 128.337 kb on - strand, within HMPREF1058_RS04045 at 128.345 kb on + strand, within HMPREF1058_RS04045 at 128.354 kb on + strand, within HMPREF1058_RS04045 at 128.365 kb on + strand, within HMPREF1058_RS04045 at 128.446 kb on + strand, within HMPREF1058_RS04045 at 128.467 kb on + strand, within HMPREF1058_RS04045 at 128.498 kb on + strand, within HMPREF1058_RS04045 at 128.514 kb on - strand, within HMPREF1058_RS04045 at 128.517 kb on - strand, within HMPREF1058_RS04045 at 128.518 kb on + strand, within HMPREF1058_RS04045 at 128.519 kb on - strand, within HMPREF1058_RS04045 at 128.573 kb on - strand, within HMPREF1058_RS04045 at 128.573 kb on - strand, within HMPREF1058_RS04045 at 128.713 kb on - strand at 128.714 kb on + strand at 128.715 kb on - strand at 128.722 kb on + strand at 128.723 kb on - strand at 128.723 kb on - strand at 128.723 kb on - strand at 128.723 kb on - strand at 128.726 kb on + strand at 128.809 kb on - strand, within HMPREF1058_RS04040 at 128.836 kb on - strand, within HMPREF1058_RS04040 at 128.843 kb on + strand, within HMPREF1058_RS04040 at 128.846 kb on - strand at 128.848 kb on - strand, within HMPREF1058_RS04040
Per-strain Table
Position Strand Gene LocusTag Fraction Mucin from porcine stomach type II 2.5 mg/ml (C) remove 125,256 + +0.1 125,264 + -0.6 125,275 + +2.2 125,292 - -1.6 125,292 - +3.2 125,310 + -0.2 125,378 + HMPREF1058_RS04055 0.14 +3.2 126,002 + -0.8 126,049 - -1.3 126,118 - -0.8 126,151 + +0.2 126,245 - HMPREF1058_RS04050 0.12 +1.2 126,292 + HMPREF1058_RS04050 0.15 -0.2 126,344 - HMPREF1058_RS04050 0.17 +1.2 126,396 + HMPREF1058_RS04050 0.20 -0.6 126,505 + HMPREF1058_RS04050 0.26 -2.7 126,529 + HMPREF1058_RS04050 0.28 -0.6 126,563 + HMPREF1058_RS04050 0.29 -0.8 126,563 + HMPREF1058_RS04050 0.29 -0.6 126,564 - HMPREF1058_RS04050 0.29 -0.2 126,574 + HMPREF1058_RS04050 0.30 -0.6 126,633 + HMPREF1058_RS04050 0.33 -0.4 126,838 + HMPREF1058_RS04050 0.44 +0.2 126,842 + HMPREF1058_RS04050 0.45 -0.9 126,946 + HMPREF1058_RS04050 0.50 +0.6 126,963 + HMPREF1058_RS04050 0.51 -0.6 127,082 + HMPREF1058_RS04050 0.58 -0.5 127,229 - HMPREF1058_RS04050 0.66 -0.4 127,232 + HMPREF1058_RS04050 0.66 -0.8 127,232 + HMPREF1058_RS04050 0.66 +0.6 127,233 - HMPREF1058_RS04050 0.66 -1.0 127,234 + HMPREF1058_RS04050 0.66 +2.2 127,235 - HMPREF1058_RS04050 0.66 -0.6 127,257 - HMPREF1058_RS04050 0.67 -1.2 127,418 + HMPREF1058_RS04050 0.76 +0.4 127,419 - HMPREF1058_RS04050 0.76 -1.3 127,419 - HMPREF1058_RS04050 0.76 +0.2 127,433 - HMPREF1058_RS04050 0.77 +0.6 127,598 + HMPREF1058_RS04050 0.86 -1.7 127,599 - HMPREF1058_RS04050 0.86 -1.0 127,676 - -0.4 127,792 + -0.1 127,847 - -0.6 127,849 - -1.2 127,929 + -1.0 127,929 + -0.6 128,070 + HMPREF1058_RS04045 0.23 +0.2 128,071 - HMPREF1058_RS04045 0.24 -0.3 128,078 + HMPREF1058_RS04045 0.24 +0.4 128,078 + HMPREF1058_RS04045 0.24 +0.6 128,133 + HMPREF1058_RS04045 0.31 -0.2 128,172 + HMPREF1058_RS04045 0.36 -0.6 128,172 + HMPREF1058_RS04045 0.36 +1.2 128,257 + HMPREF1058_RS04045 0.46 -0.2 128,337 - HMPREF1058_RS04045 0.56 -0.2 128,345 + HMPREF1058_RS04045 0.57 -0.4 128,354 + HMPREF1058_RS04045 0.58 +0.6 128,365 + HMPREF1058_RS04045 0.59 -0.8 128,446 + HMPREF1058_RS04045 0.69 -2.4 128,467 + HMPREF1058_RS04045 0.72 -1.5 128,498 + HMPREF1058_RS04045 0.76 -0.8 128,514 - HMPREF1058_RS04045 0.78 -0.9 128,517 - HMPREF1058_RS04045 0.78 -2.1 128,518 + HMPREF1058_RS04045 0.78 -0.4 128,519 - HMPREF1058_RS04045 0.78 -1.0 128,573 - HMPREF1058_RS04045 0.85 -0.6 128,573 - HMPREF1058_RS04045 0.85 -2.2 128,713 - -0.2 128,714 + +0.0 128,715 - +1.5 128,722 + +0.6 128,723 - +0.5 128,723 - -0.4 128,723 - +0.2 128,723 - -0.2 128,726 + -0.3 128,809 - HMPREF1058_RS04040 0.14 -0.5 128,836 - HMPREF1058_RS04040 0.18 -0.3 128,843 + HMPREF1058_RS04040 0.19 -0.5 128,846 - +3.9 128,848 - HMPREF1058_RS04040 0.20 -0.6
Or see this region's nucleotide sequence