Experiment: Mucin from porcine stomach type II 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS03915 and HMPREF1058_RS03910 are separated by 3 nucleotides HMPREF1058_RS03910 and HMPREF1058_RS03905 are separated by 28 nucleotides HMPREF1058_RS03905 and HMPREF1058_RS03900 are separated by 36 nucleotides
HMPREF1058_RS03915: HMPREF1058_RS03915 - hypothetical protein, at 158,726 to 159,877
_RS03915
HMPREF1058_RS03910: HMPREF1058_RS03910 - alpha amylase C-terminal domain-containing protein, at 159,881 to 161,908
_RS03910
HMPREF1058_RS03905: HMPREF1058_RS03905 - YhcH/YjgK/YiaL family protein, at 161,937 to 162,377
_RS03905
HMPREF1058_RS03900: HMPREF1058_RS03900 - DUF2461 domain-containing protein, at 162,414 to 163,079
_RS03900
Position (kb) 159
160
161
162 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 158.932 kb on + strand, within HMPREF1058_RS03915 at 158.933 kb on - strand, within HMPREF1058_RS03915 at 158.953 kb on + strand, within HMPREF1058_RS03915 at 158.954 kb on - strand, within HMPREF1058_RS03915 at 159.007 kb on + strand, within HMPREF1058_RS03915 at 159.008 kb on - strand, within HMPREF1058_RS03915 at 159.105 kb on + strand, within HMPREF1058_RS03915 at 159.106 kb on - strand, within HMPREF1058_RS03915 at 159.112 kb on - strand, within HMPREF1058_RS03915 at 159.118 kb on + strand, within HMPREF1058_RS03915 at 159.180 kb on + strand, within HMPREF1058_RS03915 at 159.232 kb on + strand, within HMPREF1058_RS03915 at 159.233 kb on - strand, within HMPREF1058_RS03915 at 159.233 kb on - strand, within HMPREF1058_RS03915 at 159.371 kb on + strand, within HMPREF1058_RS03915 at 159.372 kb on - strand, within HMPREF1058_RS03915 at 159.407 kb on - strand, within HMPREF1058_RS03915 at 159.481 kb on + strand, within HMPREF1058_RS03915 at 159.494 kb on + strand, within HMPREF1058_RS03915 at 159.497 kb on - strand, within HMPREF1058_RS03915 at 159.497 kb on - strand, within HMPREF1058_RS03915 at 159.498 kb on + strand, within HMPREF1058_RS03915 at 159.498 kb on + strand, within HMPREF1058_RS03915 at 159.498 kb on + strand, within HMPREF1058_RS03915 at 159.498 kb on + strand, within HMPREF1058_RS03915 at 159.499 kb on - strand, within HMPREF1058_RS03915 at 159.499 kb on - strand, within HMPREF1058_RS03915 at 159.499 kb on - strand, within HMPREF1058_RS03915 at 159.500 kb on + strand, within HMPREF1058_RS03915 at 159.500 kb on + strand, within HMPREF1058_RS03915 at 159.501 kb on - strand, within HMPREF1058_RS03915 at 159.501 kb on - strand, within HMPREF1058_RS03915 at 159.501 kb on - strand, within HMPREF1058_RS03915 at 159.535 kb on + strand, within HMPREF1058_RS03915 at 159.677 kb on + strand, within HMPREF1058_RS03915 at 159.695 kb on - strand, within HMPREF1058_RS03915 at 159.758 kb on + strand, within HMPREF1058_RS03915 at 159.762 kb on - strand at 159.794 kb on - strand at 159.853 kb on - strand at 159.903 kb on - strand at 159.927 kb on + strand at 159.928 kb on - strand at 159.950 kb on - strand at 159.958 kb on + strand at 159.959 kb on - strand at 159.990 kb on - strand at 159.990 kb on - strand at 160.054 kb on - strand at 160.054 kb on - strand at 160.173 kb on - strand, within HMPREF1058_RS03910 at 160.307 kb on - strand, within HMPREF1058_RS03910 at 160.307 kb on - strand, within HMPREF1058_RS03910 at 160.384 kb on - strand, within HMPREF1058_RS03910 at 160.427 kb on - strand, within HMPREF1058_RS03910 at 160.485 kb on + strand, within HMPREF1058_RS03910 at 160.486 kb on - strand, within HMPREF1058_RS03910 at 160.500 kb on - strand, within HMPREF1058_RS03910 at 160.516 kb on + strand, within HMPREF1058_RS03910 at 160.517 kb on - strand, within HMPREF1058_RS03910 at 160.565 kb on - strand at 160.669 kb on + strand, within HMPREF1058_RS03910 at 160.775 kb on + strand, within HMPREF1058_RS03910 at 160.840 kb on + strand, within HMPREF1058_RS03910 at 160.845 kb on + strand, within HMPREF1058_RS03910 at 160.858 kb on + strand, within HMPREF1058_RS03910 at 160.991 kb on - strand, within HMPREF1058_RS03910 at 161.053 kb on - strand, within HMPREF1058_RS03910 at 161.150 kb on - strand, within HMPREF1058_RS03910 at 161.244 kb on + strand, within HMPREF1058_RS03910 at 161.247 kb on + strand, within HMPREF1058_RS03910 at 161.270 kb on - strand, within HMPREF1058_RS03910 at 161.285 kb on - strand, within HMPREF1058_RS03910 at 161.285 kb on - strand, within HMPREF1058_RS03910 at 161.301 kb on - strand, within HMPREF1058_RS03910 at 161.335 kb on - strand, within HMPREF1058_RS03910 at 161.383 kb on - strand, within HMPREF1058_RS03910 at 161.490 kb on - strand, within HMPREF1058_RS03910 at 161.574 kb on - strand, within HMPREF1058_RS03910 at 161.574 kb on - strand, within HMPREF1058_RS03910 at 161.621 kb on + strand, within HMPREF1058_RS03910 at 161.629 kb on - strand, within HMPREF1058_RS03910 at 161.629 kb on - strand, within HMPREF1058_RS03910 at 161.751 kb on - strand at 161.877 kb on - strand at 161.900 kb on - strand at 161.911 kb on + strand at 161.911 kb on + strand at 161.912 kb on - strand at 161.925 kb on - strand at 162.044 kb on + strand, within HMPREF1058_RS03905 at 162.047 kb on - strand, within HMPREF1058_RS03905 at 162.095 kb on - strand, within HMPREF1058_RS03905 at 162.095 kb on - strand at 162.095 kb on - strand, within HMPREF1058_RS03905 at 162.095 kb on - strand, within HMPREF1058_RS03905 at 162.125 kb on + strand, within HMPREF1058_RS03905 at 162.125 kb on + strand, within HMPREF1058_RS03905 at 162.126 kb on - strand, within HMPREF1058_RS03905 at 162.163 kb on - strand, within HMPREF1058_RS03905 at 162.189 kb on + strand, within HMPREF1058_RS03905 at 162.235 kb on - strand, within HMPREF1058_RS03905 at 162.293 kb on + strand, within HMPREF1058_RS03905 at 162.369 kb on + strand at 162.370 kb on - strand at 162.378 kb on - strand at 162.381 kb on + strand at 162.483 kb on + strand, within HMPREF1058_RS03900 at 162.530 kb on + strand, within HMPREF1058_RS03900 at 162.531 kb on - strand, within HMPREF1058_RS03900 at 162.533 kb on - strand, within HMPREF1058_RS03900 at 162.533 kb on - strand, within HMPREF1058_RS03900 at 162.533 kb on - strand, within HMPREF1058_RS03900 at 162.533 kb on - strand, within HMPREF1058_RS03900 at 162.543 kb on - strand, within HMPREF1058_RS03900 at 162.543 kb on - strand, within HMPREF1058_RS03900 at 162.545 kb on - strand, within HMPREF1058_RS03900 at 162.552 kb on - strand, within HMPREF1058_RS03900 at 162.569 kb on + strand, within HMPREF1058_RS03900 at 162.674 kb on - strand, within HMPREF1058_RS03900 at 162.722 kb on + strand, within HMPREF1058_RS03900 at 162.722 kb on + strand, within HMPREF1058_RS03900 at 162.755 kb on + strand, within HMPREF1058_RS03900 at 162.756 kb on - strand, within HMPREF1058_RS03900 at 162.772 kb on - strand, within HMPREF1058_RS03900 at 162.773 kb on + strand, within HMPREF1058_RS03900 at 162.781 kb on + strand, within HMPREF1058_RS03900 at 162.781 kb on + strand, within HMPREF1058_RS03900 at 162.838 kb on - strand, within HMPREF1058_RS03900 at 162.842 kb on + strand, within HMPREF1058_RS03900 at 162.843 kb on - strand, within HMPREF1058_RS03900 at 162.843 kb on - strand, within HMPREF1058_RS03900
Per-strain Table
Position Strand Gene LocusTag Fraction Mucin from porcine stomach type II 2.5 mg/ml (C) remove 158,932 + HMPREF1058_RS03915 0.18 -0.6 158,933 - HMPREF1058_RS03915 0.18 -0.0 158,953 + HMPREF1058_RS03915 0.20 -0.8 158,954 - HMPREF1058_RS03915 0.20 +0.3 159,007 + HMPREF1058_RS03915 0.24 -0.7 159,008 - HMPREF1058_RS03915 0.24 -1.8 159,105 + HMPREF1058_RS03915 0.33 +0.2 159,106 - HMPREF1058_RS03915 0.33 +0.9 159,112 - HMPREF1058_RS03915 0.34 -1.0 159,118 + HMPREF1058_RS03915 0.34 +0.6 159,180 + HMPREF1058_RS03915 0.39 -0.3 159,232 + HMPREF1058_RS03915 0.44 +0.4 159,233 - HMPREF1058_RS03915 0.44 -3.1 159,233 - HMPREF1058_RS03915 0.44 +0.9 159,371 + HMPREF1058_RS03915 0.56 -1.5 159,372 - HMPREF1058_RS03915 0.56 -1.3 159,407 - HMPREF1058_RS03915 0.59 -0.2 159,481 + HMPREF1058_RS03915 0.66 +0.6 159,494 + HMPREF1058_RS03915 0.67 +1.6 159,497 - HMPREF1058_RS03915 0.67 -1.3 159,497 - HMPREF1058_RS03915 0.67 +2.0 159,498 + HMPREF1058_RS03915 0.67 -0.9 159,498 + HMPREF1058_RS03915 0.67 -0.2 159,498 + HMPREF1058_RS03915 0.67 -0.6 159,498 + HMPREF1058_RS03915 0.67 -1.3 159,499 - HMPREF1058_RS03915 0.67 +0.2 159,499 - HMPREF1058_RS03915 0.67 -0.5 159,499 - HMPREF1058_RS03915 0.67 -1.6 159,500 + HMPREF1058_RS03915 0.67 +0.2 159,500 + HMPREF1058_RS03915 0.67 +0.3 159,501 - HMPREF1058_RS03915 0.67 +1.0 159,501 - HMPREF1058_RS03915 0.67 +0.1 159,501 - HMPREF1058_RS03915 0.67 -0.0 159,535 + HMPREF1058_RS03915 0.70 -0.6 159,677 + HMPREF1058_RS03915 0.83 -0.5 159,695 - HMPREF1058_RS03915 0.84 +0.2 159,758 + HMPREF1058_RS03915 0.90 -0.6 159,762 - +0.3 159,794 - +1.8 159,853 - +0.5 159,903 - +0.2 159,927 + +2.2 159,928 - -2.1 159,950 - -1.5 159,958 + +1.2 159,959 - -2.2 159,990 - +1.4 159,990 - +0.1 160,054 - -0.8 160,054 - -1.7 160,173 - HMPREF1058_RS03910 0.14 -1.2 160,307 - HMPREF1058_RS03910 0.21 -1.7 160,307 - HMPREF1058_RS03910 0.21 -1.2 160,384 - HMPREF1058_RS03910 0.25 -1.3 160,427 - HMPREF1058_RS03910 0.27 -1.2 160,485 + HMPREF1058_RS03910 0.30 -0.0 160,486 - HMPREF1058_RS03910 0.30 -1.4 160,500 - HMPREF1058_RS03910 0.31 -1.5 160,516 + HMPREF1058_RS03910 0.31 -1.8 160,517 - HMPREF1058_RS03910 0.31 -0.3 160,565 - -0.6 160,669 + HMPREF1058_RS03910 0.39 -0.2 160,775 + HMPREF1058_RS03910 0.44 +0.2 160,840 + HMPREF1058_RS03910 0.47 +0.7 160,845 + HMPREF1058_RS03910 0.48 +0.1 160,858 + HMPREF1058_RS03910 0.48 -3.3 160,991 - HMPREF1058_RS03910 0.55 -1.3 161,053 - HMPREF1058_RS03910 0.58 -1.8 161,150 - HMPREF1058_RS03910 0.63 -0.2 161,244 + HMPREF1058_RS03910 0.67 -1.2 161,247 + HMPREF1058_RS03910 0.67 +0.8 161,270 - HMPREF1058_RS03910 0.68 -1.7 161,285 - HMPREF1058_RS03910 0.69 -0.5 161,285 - HMPREF1058_RS03910 0.69 -0.2 161,301 - HMPREF1058_RS03910 0.70 -0.8 161,335 - HMPREF1058_RS03910 0.72 -0.7 161,383 - HMPREF1058_RS03910 0.74 +0.4 161,490 - HMPREF1058_RS03910 0.79 +1.6 161,574 - HMPREF1058_RS03910 0.83 +0.0 161,574 - HMPREF1058_RS03910 0.83 +0.3 161,621 + HMPREF1058_RS03910 0.86 -0.2 161,629 - HMPREF1058_RS03910 0.86 +1.0 161,629 - HMPREF1058_RS03910 0.86 -1.3 161,751 - +0.1 161,877 - +1.2 161,900 - -0.9 161,911 + -1.0 161,911 + -1.6 161,912 - -1.4 161,925 - +1.0 162,044 + HMPREF1058_RS03905 0.24 -1.3 162,047 - HMPREF1058_RS03905 0.25 +0.8 162,095 - HMPREF1058_RS03905 0.36 -0.3 162,095 - -0.2 162,095 - HMPREF1058_RS03905 0.36 -0.2 162,095 - HMPREF1058_RS03905 0.36 +0.3 162,125 + HMPREF1058_RS03905 0.43 +0.2 162,125 + HMPREF1058_RS03905 0.43 -1.3 162,126 - HMPREF1058_RS03905 0.43 +0.0 162,163 - HMPREF1058_RS03905 0.51 +1.6 162,189 + HMPREF1058_RS03905 0.57 -0.0 162,235 - HMPREF1058_RS03905 0.68 +0.4 162,293 + HMPREF1058_RS03905 0.81 -0.0 162,369 + +1.2 162,370 - -0.6 162,378 - +1.0 162,381 + -1.4 162,483 + HMPREF1058_RS03900 0.10 +0.2 162,530 + HMPREF1058_RS03900 0.17 -1.2 162,531 - HMPREF1058_RS03900 0.18 +1.5 162,533 - HMPREF1058_RS03900 0.18 -0.2 162,533 - HMPREF1058_RS03900 0.18 +0.1 162,533 - HMPREF1058_RS03900 0.18 +0.2 162,533 - HMPREF1058_RS03900 0.18 -0.1 162,543 - HMPREF1058_RS03900 0.19 +0.1 162,543 - HMPREF1058_RS03900 0.19 -0.0 162,545 - HMPREF1058_RS03900 0.20 +0.2 162,552 - HMPREF1058_RS03900 0.21 -0.4 162,569 + HMPREF1058_RS03900 0.23 +0.7 162,674 - HMPREF1058_RS03900 0.39 +1.1 162,722 + HMPREF1058_RS03900 0.46 +2.2 162,722 + HMPREF1058_RS03900 0.46 +0.2 162,755 + HMPREF1058_RS03900 0.51 -1.0 162,756 - HMPREF1058_RS03900 0.51 -0.2 162,772 - HMPREF1058_RS03900 0.54 +1.8 162,773 + HMPREF1058_RS03900 0.54 +0.2 162,781 + HMPREF1058_RS03900 0.55 +0.6 162,781 + HMPREF1058_RS03900 0.55 -1.1 162,838 - HMPREF1058_RS03900 0.64 +0.7 162,842 + HMPREF1058_RS03900 0.64 -0.2 162,843 - HMPREF1058_RS03900 0.64 -0.1 162,843 - HMPREF1058_RS03900 0.64 +0.2
Or see this region's nucleotide sequence