Experiment: Mucin from porcine stomach type II 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS03515 and HMPREF1058_RS03510 are separated by 33 nucleotides HMPREF1058_RS03510 and HMPREF1058_RS03505 are separated by 1 nucleotides HMPREF1058_RS03505 and HMPREF1058_RS03500 are separated by 115 nucleotides
HMPREF1058_RS03515: HMPREF1058_RS03515 - phenylalanine--tRNA ligase subunit beta, at 262,781 to 265,243
_RS03515
HMPREF1058_RS03510: HMPREF1058_RS03510 - YebC/PmpR family DNA-binding transcriptional regulator, at 265,277 to 266,017
_RS03510
HMPREF1058_RS03505: HMPREF1058_RS03505 - TIGR03905 family TSCPD domain-containing protein, at 266,019 to 266,264
_RS03505
HMPREF1058_RS03500: HMPREF1058_RS03500 - DEAD/DEAH box helicase, at 266,380 to 268,743
_RS03500
Position (kb) 265
266
267 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 265.241 kb on + strand at 265.241 kb on + strand at 265.241 kb on + strand at 265.262 kb on + strand at 265.262 kb on + strand at 265.269 kb on - strand at 265.297 kb on + strand at 265.371 kb on + strand, within HMPREF1058_RS03510 at 265.372 kb on - strand, within HMPREF1058_RS03510 at 265.432 kb on + strand, within HMPREF1058_RS03510 at 265.433 kb on - strand, within HMPREF1058_RS03510 at 265.438 kb on + strand, within HMPREF1058_RS03510 at 265.438 kb on + strand, within HMPREF1058_RS03510 at 265.527 kb on - strand, within HMPREF1058_RS03510 at 265.558 kb on - strand, within HMPREF1058_RS03510 at 265.643 kb on - strand, within HMPREF1058_RS03510 at 265.676 kb on - strand, within HMPREF1058_RS03510 at 265.747 kb on + strand, within HMPREF1058_RS03510 at 265.748 kb on - strand, within HMPREF1058_RS03510 at 265.753 kb on - strand, within HMPREF1058_RS03510 at 265.790 kb on - strand, within HMPREF1058_RS03510 at 265.800 kb on - strand, within HMPREF1058_RS03510 at 265.817 kb on + strand, within HMPREF1058_RS03510 at 265.880 kb on + strand, within HMPREF1058_RS03510 at 265.880 kb on + strand, within HMPREF1058_RS03510 at 265.881 kb on - strand, within HMPREF1058_RS03510 at 265.982 kb on - strand at 265.982 kb on - strand at 266.032 kb on - strand at 266.034 kb on - strand at 266.074 kb on + strand, within HMPREF1058_RS03505 at 266.128 kb on + strand, within HMPREF1058_RS03505 at 266.128 kb on + strand, within HMPREF1058_RS03505 at 266.135 kb on + strand, within HMPREF1058_RS03505 at 266.233 kb on + strand, within HMPREF1058_RS03505 at 266.233 kb on + strand, within HMPREF1058_RS03505 at 266.262 kb on + strand at 266.286 kb on + strand at 266.322 kb on - strand at 266.323 kb on + strand at 266.323 kb on + strand at 266.323 kb on + strand at 266.324 kb on - strand at 266.324 kb on - strand at 266.326 kb on + strand at 266.326 kb on + strand at 266.326 kb on + strand at 266.327 kb on - strand at 266.557 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mucin from porcine stomach type II 2.5 mg/ml (C) remove 265,241 + +1.6 265,241 + +0.7 265,241 + -1.8 265,262 + +1.5 265,262 + +0.0 265,269 - +0.2 265,297 + +1.8 265,371 + HMPREF1058_RS03510 0.13 -1.0 265,372 - HMPREF1058_RS03510 0.13 -1.5 265,432 + HMPREF1058_RS03510 0.21 -1.0 265,433 - HMPREF1058_RS03510 0.21 -0.6 265,438 + HMPREF1058_RS03510 0.22 +0.2 265,438 + HMPREF1058_RS03510 0.22 -0.6 265,527 - HMPREF1058_RS03510 0.34 +0.8 265,558 - HMPREF1058_RS03510 0.38 -0.9 265,643 - HMPREF1058_RS03510 0.49 +0.5 265,676 - HMPREF1058_RS03510 0.54 +0.2 265,747 + HMPREF1058_RS03510 0.63 +0.1 265,748 - HMPREF1058_RS03510 0.64 -0.8 265,753 - HMPREF1058_RS03510 0.64 -0.8 265,790 - HMPREF1058_RS03510 0.69 -1.0 265,800 - HMPREF1058_RS03510 0.71 +0.3 265,817 + HMPREF1058_RS03510 0.73 -0.5 265,880 + HMPREF1058_RS03510 0.81 -0.7 265,880 + HMPREF1058_RS03510 0.81 -0.3 265,881 - HMPREF1058_RS03510 0.82 -1.0 265,982 - -3.3 265,982 - +0.8 266,032 - -0.4 266,034 - -1.4 266,074 + HMPREF1058_RS03505 0.22 +0.0 266,128 + HMPREF1058_RS03505 0.44 +0.1 266,128 + HMPREF1058_RS03505 0.44 +2.0 266,135 + HMPREF1058_RS03505 0.47 -1.4 266,233 + HMPREF1058_RS03505 0.87 +0.6 266,233 + HMPREF1058_RS03505 0.87 -0.2 266,262 + +1.0 266,286 + +0.2 266,322 - -0.3 266,323 + -0.1 266,323 + +0.6 266,323 + +2.2 266,324 - -0.1 266,324 - +1.8 266,326 + +0.1 266,326 + +0.9 266,326 + -0.4 266,327 - -0.5 266,557 - -0.6
Or see this region's nucleotide sequence