Experiment: Mucin from porcine stomach type II 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS03475 and HMPREF1058_RS03470 are separated by 16 nucleotides HMPREF1058_RS03470 and HMPREF1058_RS03465 are separated by 101 nucleotides
HMPREF1058_RS03475: HMPREF1058_RS03475 - radical SAM protein, at 272,888 to 273,961
_RS03475
HMPREF1058_RS03470: HMPREF1058_RS03470 - glycosyltransferase, at 273,978 to 275,156
_RS03470
HMPREF1058_RS03465: HMPREF1058_RS03465 - polysaccharide pyruvyl transferase family protein, at 275,258 to 276,364
_RS03465
Position (kb) 273
274
275
276 Strain fitness (log2 ratio) -2
-1
0
1
2 at 273.016 kb on + strand, within HMPREF1058_RS03475 at 273.415 kb on - strand, within HMPREF1058_RS03475 at 273.425 kb on - strand, within HMPREF1058_RS03475 at 273.500 kb on - strand, within HMPREF1058_RS03475 at 273.506 kb on - strand, within HMPREF1058_RS03475 at 273.906 kb on + strand at 273.919 kb on + strand at 273.920 kb on - strand at 274.009 kb on + strand at 274.010 kb on - strand at 274.028 kb on - strand at 274.059 kb on - strand at 274.463 kb on - strand, within HMPREF1058_RS03470 at 274.465 kb on + strand, within HMPREF1058_RS03470 at 274.465 kb on + strand, within HMPREF1058_RS03470 at 274.669 kb on - strand, within HMPREF1058_RS03470 at 274.691 kb on + strand, within HMPREF1058_RS03470 at 274.691 kb on + strand, within HMPREF1058_RS03470 at 274.691 kb on + strand at 274.734 kb on + strand, within HMPREF1058_RS03470 at 274.810 kb on - strand, within HMPREF1058_RS03470 at 274.875 kb on + strand, within HMPREF1058_RS03470 at 274.876 kb on - strand, within HMPREF1058_RS03470 at 274.876 kb on - strand, within HMPREF1058_RS03470 at 274.924 kb on - strand, within HMPREF1058_RS03470 at 275.002 kb on + strand, within HMPREF1058_RS03470 at 275.042 kb on + strand at 275.158 kb on + strand at 275.161 kb on - strand at 275.174 kb on - strand at 275.322 kb on - strand at 275.335 kb on + strand at 275.419 kb on + strand, within HMPREF1058_RS03465 at 275.523 kb on + strand, within HMPREF1058_RS03465 at 275.559 kb on - strand at 275.622 kb on - strand, within HMPREF1058_RS03465 at 275.622 kb on - strand, within HMPREF1058_RS03465 at 275.683 kb on + strand, within HMPREF1058_RS03465 at 275.706 kb on + strand, within HMPREF1058_RS03465 at 275.733 kb on + strand, within HMPREF1058_RS03465 at 275.762 kb on + strand, within HMPREF1058_RS03465 at 275.767 kb on + strand, within HMPREF1058_RS03465 at 275.810 kb on + strand, within HMPREF1058_RS03465 at 275.853 kb on + strand, within HMPREF1058_RS03465 at 275.935 kb on + strand, within HMPREF1058_RS03465 at 275.942 kb on - strand, within HMPREF1058_RS03465 at 276.026 kb on - strand, within HMPREF1058_RS03465 at 276.086 kb on + strand, within HMPREF1058_RS03465 at 276.087 kb on - strand, within HMPREF1058_RS03465 at 276.091 kb on - strand, within HMPREF1058_RS03465 at 276.116 kb on + strand, within HMPREF1058_RS03465 at 276.156 kb on + strand, within HMPREF1058_RS03465
Per-strain Table
Position Strand Gene LocusTag Fraction Mucin from porcine stomach type II 2.5 mg/ml (C) remove 273,016 + HMPREF1058_RS03475 0.12 -1.2 273,415 - HMPREF1058_RS03475 0.49 +0.1 273,425 - HMPREF1058_RS03475 0.50 -2.0 273,500 - HMPREF1058_RS03475 0.57 -0.3 273,506 - HMPREF1058_RS03475 0.58 +0.4 273,906 + -0.3 273,919 + +0.6 273,920 - -0.1 274,009 + -0.4 274,010 - -0.7 274,028 - +1.4 274,059 - +0.3 274,463 - HMPREF1058_RS03470 0.41 -1.0 274,465 + HMPREF1058_RS03470 0.41 +0.2 274,465 + HMPREF1058_RS03470 0.41 -1.0 274,669 - HMPREF1058_RS03470 0.59 +0.6 274,691 + HMPREF1058_RS03470 0.60 -0.0 274,691 + HMPREF1058_RS03470 0.60 -0.5 274,691 + -1.4 274,734 + HMPREF1058_RS03470 0.64 +1.4 274,810 - HMPREF1058_RS03470 0.71 -1.5 274,875 + HMPREF1058_RS03470 0.76 -1.7 274,876 - HMPREF1058_RS03470 0.76 -1.3 274,876 - HMPREF1058_RS03470 0.76 -0.6 274,924 - HMPREF1058_RS03470 0.80 -0.2 275,002 + HMPREF1058_RS03470 0.87 -0.1 275,042 + +0.2 275,158 + +0.3 275,161 - -0.5 275,174 - +0.6 275,322 - +1.4 275,335 + -1.3 275,419 + HMPREF1058_RS03465 0.15 -0.5 275,523 + HMPREF1058_RS03465 0.24 -1.0 275,559 - +1.2 275,622 - HMPREF1058_RS03465 0.33 -0.8 275,622 - HMPREF1058_RS03465 0.33 -2.6 275,683 + HMPREF1058_RS03465 0.38 -0.2 275,706 + HMPREF1058_RS03465 0.40 +0.2 275,733 + HMPREF1058_RS03465 0.43 +0.8 275,762 + HMPREF1058_RS03465 0.46 -1.2 275,767 + HMPREF1058_RS03465 0.46 +2.2 275,810 + HMPREF1058_RS03465 0.50 +0.3 275,853 + HMPREF1058_RS03465 0.54 +0.3 275,935 + HMPREF1058_RS03465 0.61 +0.3 275,942 - HMPREF1058_RS03465 0.62 +0.4 276,026 - HMPREF1058_RS03465 0.69 +1.2 276,086 + HMPREF1058_RS03465 0.75 -0.5 276,087 - HMPREF1058_RS03465 0.75 -1.3 276,091 - HMPREF1058_RS03465 0.75 -0.9 276,116 + HMPREF1058_RS03465 0.78 +0.5 276,156 + HMPREF1058_RS03465 0.81 -1.3
Or see this region's nucleotide sequence