Experiment: pectate 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS19085 and HMPREF1058_RS19080 overlap by 4 nucleotides HMPREF1058_RS19080 and HMPREF1058_RS19075 overlap by 11 nucleotides HMPREF1058_RS19075 and HMPREF1058_RS19070 are separated by 11 nucleotides HMPREF1058_RS19070 and HMPREF1058_RS21380 are separated by 16 nucleotides HMPREF1058_RS21380 and HMPREF1058_RS19065 are separated by 214 nucleotides HMPREF1058_RS19065 and HMPREF1058_RS19060 overlap by 4 nucleotides
HMPREF1058_RS19085: HMPREF1058_RS19085 - hypothetical protein, at 26,006 to 26,191
_RS19085
HMPREF1058_RS19080: HMPREF1058_RS19080 - hypothetical protein, at 26,188 to 26,373
_RS19080
HMPREF1058_RS19075: HMPREF1058_RS19075 - DUF3560 domain-containing protein, at 26,363 to 27,013
_RS19075
HMPREF1058_RS19070: HMPREF1058_RS19070 - hypothetical protein, at 27,025 to 27,309
_RS19070
HMPREF1058_RS21380: HMPREF1058_RS21380 - hypothetical protein, at 27,326 to 27,499
_RS21380
HMPREF1058_RS19065: HMPREF1058_RS19065 - helix-turn-helix domain-containing protein, at 27,714 to 28,025
_RS19065
HMPREF1058_RS19060: HMPREF1058_RS19060 - type II toxin-antitoxin system RelE/ParE family toxin, at 28,022 to 28,387
_RS19060
Position (kb) 27
28 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 26.050 kb on + strand, within HMPREF1058_RS19085 at 26.060 kb on - strand, within HMPREF1058_RS19085 at 26.064 kb on - strand, within HMPREF1058_RS19085 at 26.084 kb on - strand, within HMPREF1058_RS19085 at 26.091 kb on + strand, within HMPREF1058_RS19085 at 26.091 kb on + strand, within HMPREF1058_RS19085 at 26.178 kb on - strand at 26.224 kb on - strand, within HMPREF1058_RS19080 at 26.249 kb on + strand, within HMPREF1058_RS19080 at 26.250 kb on - strand, within HMPREF1058_RS19080 at 26.251 kb on + strand, within HMPREF1058_RS19080 at 26.252 kb on - strand, within HMPREF1058_RS19080 at 26.316 kb on + strand, within HMPREF1058_RS19080 at 26.317 kb on - strand at 26.317 kb on - strand, within HMPREF1058_RS19080 at 26.400 kb on + strand at 26.436 kb on + strand, within HMPREF1058_RS19075 at 26.441 kb on - strand, within HMPREF1058_RS19075 at 26.441 kb on - strand, within HMPREF1058_RS19075 at 26.448 kb on + strand, within HMPREF1058_RS19075 at 26.515 kb on + strand, within HMPREF1058_RS19075 at 26.516 kb on - strand, within HMPREF1058_RS19075 at 26.711 kb on + strand, within HMPREF1058_RS19075 at 26.728 kb on + strand, within HMPREF1058_RS19075 at 26.825 kb on + strand, within HMPREF1058_RS19075 at 26.825 kb on + strand, within HMPREF1058_RS19075 at 26.857 kb on - strand, within HMPREF1058_RS19075 at 26.857 kb on - strand, within HMPREF1058_RS19075 at 26.863 kb on - strand, within HMPREF1058_RS19075 at 26.863 kb on - strand, within HMPREF1058_RS19075 at 26.890 kb on + strand, within HMPREF1058_RS19075 at 26.920 kb on - strand, within HMPREF1058_RS19075 at 26.930 kb on - strand, within HMPREF1058_RS19075 at 26.938 kb on + strand, within HMPREF1058_RS19075 at 27.007 kb on + strand at 27.008 kb on - strand at 27.008 kb on - strand at 27.013 kb on + strand at 27.019 kb on + strand at 27.046 kb on + strand at 27.098 kb on - strand, within HMPREF1058_RS19070 at 27.251 kb on + strand, within HMPREF1058_RS19070 at 27.252 kb on - strand, within HMPREF1058_RS19070 at 27.255 kb on + strand, within HMPREF1058_RS19070 at 27.263 kb on + strand, within HMPREF1058_RS19070 at 27.264 kb on - strand, within HMPREF1058_RS19070 at 27.264 kb on - strand, within HMPREF1058_RS19070 at 27.264 kb on - strand, within HMPREF1058_RS19070 at 27.325 kb on - strand at 27.367 kb on + strand, within HMPREF1058_RS21380 at 27.368 kb on - strand, within HMPREF1058_RS21380 at 27.392 kb on - strand, within HMPREF1058_RS21380 at 27.392 kb on - strand, within HMPREF1058_RS21380 at 27.472 kb on - strand, within HMPREF1058_RS21380 at 27.481 kb on + strand, within HMPREF1058_RS21380 at 27.514 kb on - strand at 27.514 kb on - strand at 27.523 kb on + strand at 27.524 kb on - strand at 27.526 kb on + strand at 27.527 kb on - strand at 27.527 kb on - strand at 28.128 kb on - strand, within HMPREF1058_RS19060 at 28.204 kb on - strand, within HMPREF1058_RS19060 at 28.206 kb on - strand, within HMPREF1058_RS19060 at 28.230 kb on - strand, within HMPREF1058_RS19060 at 28.230 kb on - strand, within HMPREF1058_RS19060 at 28.232 kb on - strand, within HMPREF1058_RS19060 at 28.234 kb on - strand, within HMPREF1058_RS19060 at 28.234 kb on - strand, within HMPREF1058_RS19060 at 28.239 kb on - strand, within HMPREF1058_RS19060 at 28.252 kb on - strand, within HMPREF1058_RS19060 at 28.252 kb on - strand, within HMPREF1058_RS19060 at 28.252 kb on - strand, within HMPREF1058_RS19060
Per-strain Table
Position Strand Gene LocusTag Fraction pectate 2.5 mg/ml (C) remove 26,050 + HMPREF1058_RS19085 0.24 -0.4 26,060 - HMPREF1058_RS19085 0.29 +0.4 26,064 - HMPREF1058_RS19085 0.31 -1.0 26,084 - HMPREF1058_RS19085 0.42 +0.6 26,091 + HMPREF1058_RS19085 0.46 -0.8 26,091 + HMPREF1058_RS19085 0.46 +0.0 26,178 - -0.8 26,224 - HMPREF1058_RS19080 0.19 -0.2 26,249 + HMPREF1058_RS19080 0.33 -0.2 26,250 - HMPREF1058_RS19080 0.33 -0.1 26,251 + HMPREF1058_RS19080 0.34 -0.0 26,252 - HMPREF1058_RS19080 0.34 -0.1 26,316 + HMPREF1058_RS19080 0.69 +0.0 26,317 - +1.0 26,317 - HMPREF1058_RS19080 0.69 +0.3 26,400 + +0.1 26,436 + HMPREF1058_RS19075 0.11 -0.2 26,441 - HMPREF1058_RS19075 0.12 +1.6 26,441 - HMPREF1058_RS19075 0.12 -0.5 26,448 + HMPREF1058_RS19075 0.13 +0.1 26,515 + HMPREF1058_RS19075 0.23 +0.4 26,516 - HMPREF1058_RS19075 0.24 +1.0 26,711 + HMPREF1058_RS19075 0.53 -0.7 26,728 + HMPREF1058_RS19075 0.56 -1.3 26,825 + HMPREF1058_RS19075 0.71 -1.6 26,825 + HMPREF1058_RS19075 0.71 +0.5 26,857 - HMPREF1058_RS19075 0.76 -0.8 26,857 - HMPREF1058_RS19075 0.76 +0.2 26,863 - HMPREF1058_RS19075 0.77 +0.5 26,863 - HMPREF1058_RS19075 0.77 -0.3 26,890 + HMPREF1058_RS19075 0.81 -0.2 26,920 - HMPREF1058_RS19075 0.86 -0.5 26,930 - HMPREF1058_RS19075 0.87 +0.2 26,938 + HMPREF1058_RS19075 0.88 -1.2 27,007 + -0.7 27,008 - -1.5 27,008 - +0.2 27,013 + -0.6 27,019 + +0.4 27,046 + +3.6 27,098 - HMPREF1058_RS19070 0.26 +0.0 27,251 + HMPREF1058_RS19070 0.79 -0.2 27,252 - HMPREF1058_RS19070 0.80 -1.2 27,255 + HMPREF1058_RS19070 0.81 +1.0 27,263 + HMPREF1058_RS19070 0.84 -0.4 27,264 - HMPREF1058_RS19070 0.84 +0.4 27,264 - HMPREF1058_RS19070 0.84 -1.4 27,264 - HMPREF1058_RS19070 0.84 -0.3 27,325 - +0.1 27,367 + HMPREF1058_RS21380 0.24 +0.2 27,368 - HMPREF1058_RS21380 0.24 -0.2 27,392 - HMPREF1058_RS21380 0.38 +0.3 27,392 - HMPREF1058_RS21380 0.38 -0.1 27,472 - HMPREF1058_RS21380 0.84 -0.5 27,481 + HMPREF1058_RS21380 0.89 -0.2 27,514 - -0.2 27,514 - -0.2 27,523 + -2.6 27,524 - -0.3 27,526 + -0.7 27,527 - +1.0 27,527 - +0.4 28,128 - HMPREF1058_RS19060 0.29 +0.3 28,204 - HMPREF1058_RS19060 0.50 +0.4 28,206 - HMPREF1058_RS19060 0.50 -0.4 28,230 - HMPREF1058_RS19060 0.57 -0.7 28,230 - HMPREF1058_RS19060 0.57 +0.1 28,232 - HMPREF1058_RS19060 0.57 -0.2 28,234 - HMPREF1058_RS19060 0.58 -0.3 28,234 - HMPREF1058_RS19060 0.58 -0.2 28,239 - HMPREF1058_RS19060 0.59 -0.9 28,252 - HMPREF1058_RS19060 0.63 +0.1 28,252 - HMPREF1058_RS19060 0.63 -1.2 28,252 - HMPREF1058_RS19060 0.63 -1.3
Or see this region's nucleotide sequence