Experiment: pectate 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS18890 and HMPREF1058_RS18885 overlap by 1 nucleotides HMPREF1058_RS18885 and HMPREF1058_RS18880 overlap by 17 nucleotides HMPREF1058_RS18880 and HMPREF1058_RS18875 are separated by 19 nucleotides HMPREF1058_RS18875 and HMPREF1058_RS18870 are separated by 416 nucleotides HMPREF1058_RS18870 and HMPREF1058_RS21385 are separated by 26 nucleotides
HMPREF1058_RS18890: HMPREF1058_RS18890 - DUF3127 domain-containing protein, at 51,787 to 52,233
_RS18890
HMPREF1058_RS18885: HMPREF1058_RS18885 - hypothetical protein, at 52,233 to 53,063
_RS18885
HMPREF1058_RS18880: HMPREF1058_RS18880 - ATP-binding protein, at 53,047 to 53,976
_RS18880
HMPREF1058_RS18875: HMPREF1058_RS18875 - hypothetical protein, at 53,996 to 54,253
_RS18875
HMPREF1058_RS18870: HMPREF1058_RS18870 - hypothetical protein, at 54,670 to 54,897
_RS18870
HMPREF1058_RS21385: HMPREF1058_RS21385 - tRNA-OTHER, at 54,924 to 55,005
_RS21385
Position (kb) 53
54 Strain fitness (log2 ratio) -2
-1
0
1 at 52.077 kb on + strand, within HMPREF1058_RS18890 at 52.118 kb on + strand, within HMPREF1058_RS18890 at 52.118 kb on + strand, within HMPREF1058_RS18890 at 52.122 kb on + strand, within HMPREF1058_RS18890 at 52.180 kb on + strand, within HMPREF1058_RS18890 at 52.268 kb on + strand at 52.329 kb on + strand, within HMPREF1058_RS18885 at 52.370 kb on + strand, within HMPREF1058_RS18885 at 52.370 kb on + strand, within HMPREF1058_RS18885 at 52.381 kb on + strand, within HMPREF1058_RS18885 at 52.464 kb on + strand, within HMPREF1058_RS18885 at 52.682 kb on + strand, within HMPREF1058_RS18885 at 52.687 kb on + strand, within HMPREF1058_RS18885 at 52.688 kb on - strand, within HMPREF1058_RS18885 at 52.704 kb on + strand, within HMPREF1058_RS18885 at 52.732 kb on + strand, within HMPREF1058_RS18885 at 52.781 kb on + strand, within HMPREF1058_RS18885 at 52.783 kb on + strand, within HMPREF1058_RS18885 at 52.783 kb on + strand, within HMPREF1058_RS18885 at 52.785 kb on + strand, within HMPREF1058_RS18885 at 52.829 kb on + strand at 52.975 kb on + strand, within HMPREF1058_RS18885 at 53.035 kb on + strand at 53.039 kb on + strand at 53.048 kb on + strand at 53.109 kb on + strand at 53.161 kb on - strand, within HMPREF1058_RS18880 at 53.431 kb on - strand, within HMPREF1058_RS18880 at 53.434 kb on - strand, within HMPREF1058_RS18880 at 53.719 kb on - strand, within HMPREF1058_RS18880 at 53.803 kb on + strand, within HMPREF1058_RS18880 at 53.803 kb on + strand, within HMPREF1058_RS18880 at 53.803 kb on + strand, within HMPREF1058_RS18880 at 53.804 kb on - strand, within HMPREF1058_RS18880 at 53.805 kb on + strand, within HMPREF1058_RS18880 at 53.805 kb on + strand at 53.889 kb on + strand at 53.947 kb on + strand at 54.044 kb on + strand, within HMPREF1058_RS18875 at 54.463 kb on + strand at 54.465 kb on + strand at 54.465 kb on + strand at 54.595 kb on + strand at 54.595 kb on + strand at 54.595 kb on + strand at 54.693 kb on + strand, within HMPREF1058_RS18870 at 54.693 kb on + strand, within HMPREF1058_RS18870 at 54.748 kb on + strand, within HMPREF1058_RS18870
Per-strain Table
Position Strand Gene LocusTag Fraction pectate 2.5 mg/ml (C) remove 52,077 + HMPREF1058_RS18890 0.65 +0.5 52,118 + HMPREF1058_RS18890 0.74 +0.0 52,118 + HMPREF1058_RS18890 0.74 +0.6 52,122 + HMPREF1058_RS18890 0.75 -1.2 52,180 + HMPREF1058_RS18890 0.88 +1.5 52,268 + +0.4 52,329 + HMPREF1058_RS18885 0.12 -1.6 52,370 + HMPREF1058_RS18885 0.16 -0.2 52,370 + HMPREF1058_RS18885 0.16 -0.2 52,381 + HMPREF1058_RS18885 0.18 -1.3 52,464 + HMPREF1058_RS18885 0.28 -1.0 52,682 + HMPREF1058_RS18885 0.54 +0.4 52,687 + HMPREF1058_RS18885 0.55 +0.1 52,688 - HMPREF1058_RS18885 0.55 -1.8 52,704 + HMPREF1058_RS18885 0.57 -0.3 52,732 + HMPREF1058_RS18885 0.60 -0.4 52,781 + HMPREF1058_RS18885 0.66 -0.6 52,783 + HMPREF1058_RS18885 0.66 -1.0 52,783 + HMPREF1058_RS18885 0.66 +0.7 52,785 + HMPREF1058_RS18885 0.66 +0.3 52,829 + -1.5 52,975 + HMPREF1058_RS18885 0.89 -1.2 53,035 + -2.2 53,039 + -2.6 53,048 + -0.3 53,109 + +1.4 53,161 - HMPREF1058_RS18880 0.12 -2.0 53,431 - HMPREF1058_RS18880 0.41 -1.8 53,434 - HMPREF1058_RS18880 0.42 +0.2 53,719 - HMPREF1058_RS18880 0.72 -0.5 53,803 + HMPREF1058_RS18880 0.81 -1.5 53,803 + HMPREF1058_RS18880 0.81 +0.1 53,803 + HMPREF1058_RS18880 0.81 -1.3 53,804 - HMPREF1058_RS18880 0.81 -2.7 53,805 + HMPREF1058_RS18880 0.82 +0.3 53,805 + +0.7 53,889 + -0.7 53,947 + +0.1 54,044 + HMPREF1058_RS18875 0.19 +0.4 54,463 + -0.2 54,465 + +1.1 54,465 + -0.4 54,595 + +1.0 54,595 + -0.3 54,595 + +1.0 54,693 + HMPREF1058_RS18870 0.10 -0.6 54,693 + HMPREF1058_RS18870 0.10 -0.5 54,748 + HMPREF1058_RS18870 0.34 -1.2
Or see this region's nucleotide sequence