Experiment: pectate 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS18670 and HMPREF1058_RS18660 are separated by 424 nucleotides HMPREF1058_RS18660 and HMPREF1058_RS18655 are separated by 8 nucleotides
HMPREF1058_RS18670: HMPREF1058_RS18670 - F0F1 ATP synthase subunit A, at 103,089 to 104,180
_RS18670
HMPREF1058_RS18660: HMPREF1058_RS18660 - hypothetical protein, at 104,605 to 104,859
_RS18660
HMPREF1058_RS18655: HMPREF1058_RS18655 - F0F1 ATP synthase subunit beta, at 104,868 to 106,403
_RS18655
Position (kb) 104
105 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 103.625 kb on + strand, within HMPREF1058_RS18670 at 103.626 kb on - strand, within HMPREF1058_RS18670 at 103.628 kb on - strand, within HMPREF1058_RS18670 at 103.676 kb on + strand, within HMPREF1058_RS18670 at 103.722 kb on + strand, within HMPREF1058_RS18670 at 103.761 kb on + strand, within HMPREF1058_RS18670 at 103.762 kb on - strand, within HMPREF1058_RS18670 at 103.762 kb on - strand, within HMPREF1058_RS18670 at 103.812 kb on - strand, within HMPREF1058_RS18670 at 103.812 kb on - strand, within HMPREF1058_RS18670 at 103.869 kb on - strand, within HMPREF1058_RS18670 at 103.897 kb on + strand, within HMPREF1058_RS18670 at 103.991 kb on + strand, within HMPREF1058_RS18670 at 103.991 kb on + strand, within HMPREF1058_RS18670 at 103.992 kb on - strand, within HMPREF1058_RS18670 at 103.995 kb on + strand, within HMPREF1058_RS18670 at 103.995 kb on + strand, within HMPREF1058_RS18670 at 103.996 kb on - strand, within HMPREF1058_RS18670 at 103.996 kb on - strand, within HMPREF1058_RS18670 at 103.997 kb on + strand, within HMPREF1058_RS18670 at 103.997 kb on + strand, within HMPREF1058_RS18670 at 103.998 kb on - strand, within HMPREF1058_RS18670 at 103.998 kb on - strand, within HMPREF1058_RS18670 at 103.998 kb on - strand, within HMPREF1058_RS18670 at 104.003 kb on + strand, within HMPREF1058_RS18670 at 104.003 kb on + strand, within HMPREF1058_RS18670 at 104.004 kb on - strand, within HMPREF1058_RS18670 at 104.010 kb on + strand, within HMPREF1058_RS18670 at 104.010 kb on + strand, within HMPREF1058_RS18670 at 104.011 kb on - strand, within HMPREF1058_RS18670 at 104.043 kb on + strand, within HMPREF1058_RS18670 at 104.043 kb on + strand at 104.044 kb on - strand, within HMPREF1058_RS18670 at 104.044 kb on - strand, within HMPREF1058_RS18670 at 104.044 kb on - strand, within HMPREF1058_RS18670 at 104.044 kb on - strand, within HMPREF1058_RS18670 at 104.046 kb on - strand, within HMPREF1058_RS18670 at 104.160 kb on + strand at 104.160 kb on + strand at 104.160 kb on + strand at 104.161 kb on - strand at 104.162 kb on + strand at 104.162 kb on + strand at 104.162 kb on + strand at 104.164 kb on + strand at 104.183 kb on + strand at 104.187 kb on + strand at 104.190 kb on - strand at 104.265 kb on - strand at 104.265 kb on - strand at 104.276 kb on + strand at 104.276 kb on + strand at 104.277 kb on - strand at 104.277 kb on - strand at 104.285 kb on - strand at 104.287 kb on - strand at 104.424 kb on + strand at 104.424 kb on + strand at 104.424 kb on + strand at 104.425 kb on - strand at 104.425 kb on - strand at 104.425 kb on - strand at 104.487 kb on - strand at 104.536 kb on + strand at 104.536 kb on + strand at 104.546 kb on - strand at 104.546 kb on - strand at 104.549 kb on - strand at 104.600 kb on - strand at 104.696 kb on + strand, within HMPREF1058_RS18660 at 104.744 kb on + strand, within HMPREF1058_RS18660 at 104.859 kb on + strand at 104.860 kb on - strand at 104.869 kb on + strand at 104.935 kb on - strand at 104.963 kb on - strand at 104.963 kb on - strand at 105.146 kb on + strand, within HMPREF1058_RS18655 at 105.146 kb on + strand, within HMPREF1058_RS18655 at 105.211 kb on + strand, within HMPREF1058_RS18655 at 105.245 kb on + strand, within HMPREF1058_RS18655 at 105.246 kb on - strand, within HMPREF1058_RS18655 at 105.270 kb on + strand, within HMPREF1058_RS18655 at 105.302 kb on + strand, within HMPREF1058_RS18655 at 105.341 kb on + strand, within HMPREF1058_RS18655 at 105.341 kb on + strand, within HMPREF1058_RS18655 at 105.378 kb on + strand, within HMPREF1058_RS18655 at 105.382 kb on + strand, within HMPREF1058_RS18655 at 105.382 kb on + strand, within HMPREF1058_RS18655 at 105.382 kb on + strand, within HMPREF1058_RS18655 at 105.382 kb on + strand, within HMPREF1058_RS18655 at 105.382 kb on + strand, within HMPREF1058_RS18655 at 105.382 kb on + strand, within HMPREF1058_RS18655 at 105.383 kb on - strand, within HMPREF1058_RS18655 at 105.383 kb on - strand, within HMPREF1058_RS18655 at 105.383 kb on - strand, within HMPREF1058_RS18655 at 105.420 kb on - strand, within HMPREF1058_RS18655 at 105.540 kb on + strand, within HMPREF1058_RS18655 at 105.540 kb on + strand, within HMPREF1058_RS18655 at 105.541 kb on - strand, within HMPREF1058_RS18655 at 105.543 kb on - strand, within HMPREF1058_RS18655 at 105.677 kb on - strand, within HMPREF1058_RS18655 at 105.712 kb on + strand, within HMPREF1058_RS18655 at 105.712 kb on + strand, within HMPREF1058_RS18655 at 105.827 kb on + strand, within HMPREF1058_RS18655 at 105.827 kb on + strand, within HMPREF1058_RS18655 at 105.828 kb on - strand, within HMPREF1058_RS18655
Per-strain Table
Position Strand Gene LocusTag Fraction pectate 2.5 mg/ml (C) remove 103,625 + HMPREF1058_RS18670 0.49 +0.4 103,626 - HMPREF1058_RS18670 0.49 -0.6 103,628 - HMPREF1058_RS18670 0.49 -0.6 103,676 + HMPREF1058_RS18670 0.54 +0.2 103,722 + HMPREF1058_RS18670 0.58 +0.4 103,761 + HMPREF1058_RS18670 0.62 +0.2 103,762 - HMPREF1058_RS18670 0.62 -0.3 103,762 - HMPREF1058_RS18670 0.62 -0.7 103,812 - HMPREF1058_RS18670 0.66 -0.4 103,812 - HMPREF1058_RS18670 0.66 -0.8 103,869 - HMPREF1058_RS18670 0.71 +0.8 103,897 + HMPREF1058_RS18670 0.74 -0.1 103,991 + HMPREF1058_RS18670 0.83 -0.2 103,991 + HMPREF1058_RS18670 0.83 -0.6 103,992 - HMPREF1058_RS18670 0.83 +1.2 103,995 + HMPREF1058_RS18670 0.83 +1.0 103,995 + HMPREF1058_RS18670 0.83 -0.5 103,996 - HMPREF1058_RS18670 0.83 +0.8 103,996 - HMPREF1058_RS18670 0.83 -1.1 103,997 + HMPREF1058_RS18670 0.83 -0.2 103,997 + HMPREF1058_RS18670 0.83 +2.3 103,998 - HMPREF1058_RS18670 0.83 +1.6 103,998 - HMPREF1058_RS18670 0.83 -1.1 103,998 - HMPREF1058_RS18670 0.83 +0.4 104,003 + HMPREF1058_RS18670 0.84 -0.9 104,003 + HMPREF1058_RS18670 0.84 +1.1 104,004 - HMPREF1058_RS18670 0.84 -0.2 104,010 + HMPREF1058_RS18670 0.84 +0.2 104,010 + HMPREF1058_RS18670 0.84 +0.1 104,011 - HMPREF1058_RS18670 0.84 +0.5 104,043 + HMPREF1058_RS18670 0.87 +0.4 104,043 + +0.4 104,044 - HMPREF1058_RS18670 0.87 -0.9 104,044 - HMPREF1058_RS18670 0.87 +0.7 104,044 - HMPREF1058_RS18670 0.87 +0.1 104,044 - HMPREF1058_RS18670 0.87 -0.5 104,046 - HMPREF1058_RS18670 0.88 +1.2 104,160 + +0.0 104,160 + +0.4 104,160 + +0.2 104,161 - +0.5 104,162 + -1.2 104,162 + +0.5 104,162 + +0.5 104,164 + -0.4 104,183 + -0.2 104,187 + -0.7 104,190 - +1.2 104,265 - -2.5 104,265 - +1.6 104,276 + -0.1 104,276 + +0.1 104,277 - -0.8 104,277 - -2.0 104,285 - +1.0 104,287 - +0.6 104,424 + -1.2 104,424 + -0.6 104,424 + -0.8 104,425 - -2.8 104,425 - -0.3 104,425 - -0.3 104,487 - -0.3 104,536 + -1.2 104,536 + +1.6 104,546 - +0.3 104,546 - -0.9 104,549 - +0.1 104,600 - -0.5 104,696 + HMPREF1058_RS18660 0.36 -0.3 104,744 + HMPREF1058_RS18660 0.55 -1.8 104,859 + +0.2 104,860 - -1.2 104,869 + +0.4 104,935 - +1.1 104,963 - +0.3 104,963 - +0.1 105,146 + HMPREF1058_RS18655 0.18 -1.3 105,146 + HMPREF1058_RS18655 0.18 +0.7 105,211 + HMPREF1058_RS18655 0.22 +1.0 105,245 + HMPREF1058_RS18655 0.25 +1.1 105,246 - HMPREF1058_RS18655 0.25 +0.8 105,270 + HMPREF1058_RS18655 0.26 +0.1 105,302 + HMPREF1058_RS18655 0.28 +0.6 105,341 + HMPREF1058_RS18655 0.31 +0.0 105,341 + HMPREF1058_RS18655 0.31 +0.5 105,378 + HMPREF1058_RS18655 0.33 +0.2 105,382 + HMPREF1058_RS18655 0.33 +0.5 105,382 + HMPREF1058_RS18655 0.33 -0.1 105,382 + HMPREF1058_RS18655 0.33 -0.1 105,382 + HMPREF1058_RS18655 0.33 -0.4 105,382 + HMPREF1058_RS18655 0.33 +1.6 105,382 + HMPREF1058_RS18655 0.33 -0.8 105,383 - HMPREF1058_RS18655 0.34 +0.4 105,383 - HMPREF1058_RS18655 0.34 -0.7 105,383 - HMPREF1058_RS18655 0.34 +0.9 105,420 - HMPREF1058_RS18655 0.36 +0.9 105,540 + HMPREF1058_RS18655 0.44 -0.6 105,540 + HMPREF1058_RS18655 0.44 +0.6 105,541 - HMPREF1058_RS18655 0.44 -0.7 105,543 - HMPREF1058_RS18655 0.44 +0.8 105,677 - HMPREF1058_RS18655 0.53 +2.0 105,712 + HMPREF1058_RS18655 0.55 -0.4 105,712 + HMPREF1058_RS18655 0.55 -0.6 105,827 + HMPREF1058_RS18655 0.62 +2.4 105,827 + HMPREF1058_RS18655 0.62 +1.0 105,828 - HMPREF1058_RS18655 0.62 -2.3
Or see this region's nucleotide sequence