Experiment: pectate 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS18530 and HMPREF1058_RS18525 are separated by 162 nucleotides HMPREF1058_RS18525 and HMPREF1058_RS21580 overlap by 35 nucleotides HMPREF1058_RS21580 and HMPREF1058_RS18520 are separated by 159 nucleotides
HMPREF1058_RS18530: HMPREF1058_RS18530 - ATP-binding protein, at 132,829 to 134,397
_RS18530
HMPREF1058_RS18525: HMPREF1058_RS18525 - hypothetical protein, at 134,560 to 134,757
_RS18525
HMPREF1058_RS21580: HMPREF1058_RS21580 - hypothetical protein, at 134,723 to 134,872
_RS21580
HMPREF1058_RS18520: HMPREF1058_RS18520 - hypothetical protein, at 135,032 to 135,688
_RS18520
Position (kb) 134
135 Strain fitness (log2 ratio) -2
-1
0
1 at 134.473 kb on - strand at 134.516 kb on + strand at 134.516 kb on + strand at 134.517 kb on - strand at 134.517 kb on - strand at 134.575 kb on + strand at 134.672 kb on + strand, within HMPREF1058_RS18525 at 134.684 kb on - strand, within HMPREF1058_RS18525 at 134.773 kb on + strand, within HMPREF1058_RS21580 at 134.822 kb on + strand, within HMPREF1058_RS21580 at 134.886 kb on - strand at 134.894 kb on - strand at 134.910 kb on - strand at 134.910 kb on - strand at 134.910 kb on - strand at 134.952 kb on + strand at 134.955 kb on - strand at 134.966 kb on + strand at 134.966 kb on + strand at 135.017 kb on - strand at 135.269 kb on + strand, within HMPREF1058_RS18520 at 135.348 kb on + strand, within HMPREF1058_RS18520 at 135.349 kb on - strand, within HMPREF1058_RS18520 at 135.349 kb on - strand, within HMPREF1058_RS18520 at 135.539 kb on + strand, within HMPREF1058_RS18520 at 135.654 kb on - strand at 135.696 kb on - strand at 135.731 kb on + strand at 135.757 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction pectate 2.5 mg/ml (C) remove 134,473 - +0.1 134,516 + +1.4 134,516 + +0.1 134,517 - -0.2 134,517 - -1.2 134,575 + -0.3 134,672 + HMPREF1058_RS18525 0.57 -1.1 134,684 - HMPREF1058_RS18525 0.63 -1.3 134,773 + HMPREF1058_RS21580 0.33 -1.2 134,822 + HMPREF1058_RS21580 0.66 -2.2 134,886 - -0.3 134,894 - +0.2 134,910 - -1.2 134,910 - +0.4 134,910 - +1.2 134,952 + -1.2 134,955 - +1.0 134,966 + +0.2 134,966 + -0.3 135,017 - -0.9 135,269 + HMPREF1058_RS18520 0.36 +0.1 135,348 + HMPREF1058_RS18520 0.48 +0.0 135,349 - HMPREF1058_RS18520 0.48 +0.9 135,349 - HMPREF1058_RS18520 0.48 +0.7 135,539 + HMPREF1058_RS18520 0.77 -0.6 135,654 - +0.4 135,696 - -0.4 135,731 + -0.3 135,757 + +0.3
Or see this region's nucleotide sequence