Experiment: pectate 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS18510 and HMPREF1058_RS21390 are separated by 218 nucleotides HMPREF1058_RS21390 and HMPREF1058_RS18505 are separated by 61 nucleotides HMPREF1058_RS18505 and HMPREF1058_RS18500 are separated by 61 nucleotides HMPREF1058_RS18500 and HMPREF1058_RS18495 overlap by 8 nucleotides
HMPREF1058_RS18510: HMPREF1058_RS18510 - DNA-binding protein, at 138,522 to 139,016
_RS18510
HMPREF1058_RS21390: HMPREF1058_RS21390 - smalltalk protein, at 139,235 to 139,345
_RS21390
HMPREF1058_RS18505: HMPREF1058_RS18505 - N-acetylmuramoyl-L-alanine amidase, at 139,407 to 139,925
_RS18505
HMPREF1058_RS18500: HMPREF1058_RS18500 - DUF86 domain-containing protein, at 139,987 to 140,379
_RS18500
HMPREF1058_RS18495: HMPREF1058_RS18495 - nucleotidyltransferase family protein, at 140,372 to 140,665
_RS18495
Position (kb) 139
140 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 138.508 kb on + strand at 138.531 kb on + strand at 138.537 kb on - strand at 138.537 kb on - strand at 138.585 kb on + strand, within HMPREF1058_RS18510 at 138.638 kb on + strand, within HMPREF1058_RS18510 at 138.808 kb on - strand, within HMPREF1058_RS18510 at 138.889 kb on + strand, within HMPREF1058_RS18510 at 139.045 kb on - strand at 139.080 kb on + strand at 139.229 kb on - strand at 139.712 kb on - strand, within HMPREF1058_RS18505 at 139.992 kb on + strand at 139.992 kb on + strand at 139.992 kb on + strand at 140.044 kb on + strand, within HMPREF1058_RS18500 at 140.045 kb on - strand, within HMPREF1058_RS18500 at 140.095 kb on + strand, within HMPREF1058_RS18500 at 140.095 kb on + strand, within HMPREF1058_RS18500 at 140.106 kb on - strand, within HMPREF1058_RS18500 at 140.106 kb on - strand, within HMPREF1058_RS18500 at 140.113 kb on + strand, within HMPREF1058_RS18500 at 140.113 kb on + strand, within HMPREF1058_RS18500 at 140.113 kb on + strand, within HMPREF1058_RS18500 at 140.113 kb on + strand, within HMPREF1058_RS18500 at 140.114 kb on - strand, within HMPREF1058_RS18500 at 140.114 kb on - strand, within HMPREF1058_RS18500 at 140.116 kb on + strand, within HMPREF1058_RS18500 at 140.116 kb on + strand, within HMPREF1058_RS18500 at 140.117 kb on - strand, within HMPREF1058_RS18500 at 140.117 kb on - strand, within HMPREF1058_RS18500 at 140.137 kb on + strand, within HMPREF1058_RS18500 at 140.241 kb on + strand, within HMPREF1058_RS18500 at 140.241 kb on + strand at 140.242 kb on - strand, within HMPREF1058_RS18500 at 140.351 kb on - strand at 140.353 kb on - strand at 140.379 kb on + strand at 140.379 kb on + strand at 140.380 kb on - strand at 140.380 kb on - strand at 140.383 kb on + strand at 140.438 kb on + strand, within HMPREF1058_RS18495 at 140.438 kb on + strand, within HMPREF1058_RS18495 at 140.605 kb on + strand, within HMPREF1058_RS18495 at 140.623 kb on + strand, within HMPREF1058_RS18495 at 140.625 kb on + strand, within HMPREF1058_RS18495 at 140.626 kb on - strand, within HMPREF1058_RS18495 at 140.680 kb on + strand at 140.695 kb on - strand at 140.699 kb on + strand at 140.753 kb on + strand at 140.755 kb on + strand at 140.756 kb on - strand at 140.831 kb on - strand at 140.852 kb on + strand at 140.871 kb on + strand at 140.910 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction pectate 2.5 mg/ml (C) remove 138,508 + +0.2 138,531 + -3.4 138,537 - +0.0 138,537 - +0.6 138,585 + HMPREF1058_RS18510 0.13 -0.3 138,638 + HMPREF1058_RS18510 0.23 -0.4 138,808 - HMPREF1058_RS18510 0.58 +1.4 138,889 + HMPREF1058_RS18510 0.74 -0.5 139,045 - -1.8 139,080 + -1.2 139,229 - +0.0 139,712 - HMPREF1058_RS18505 0.59 -0.8 139,992 + -2.6 139,992 + -1.1 139,992 + -0.6 140,044 + HMPREF1058_RS18500 0.15 +2.0 140,045 - HMPREF1058_RS18500 0.15 -0.4 140,095 + HMPREF1058_RS18500 0.27 -1.6 140,095 + HMPREF1058_RS18500 0.27 +0.8 140,106 - HMPREF1058_RS18500 0.30 -0.4 140,106 - HMPREF1058_RS18500 0.30 +0.9 140,113 + HMPREF1058_RS18500 0.32 -0.9 140,113 + HMPREF1058_RS18500 0.32 -1.2 140,113 + HMPREF1058_RS18500 0.32 +1.0 140,113 + HMPREF1058_RS18500 0.32 -0.8 140,114 - HMPREF1058_RS18500 0.32 +1.4 140,114 - HMPREF1058_RS18500 0.32 +0.5 140,116 + HMPREF1058_RS18500 0.33 -0.8 140,116 + HMPREF1058_RS18500 0.33 +0.9 140,117 - HMPREF1058_RS18500 0.33 +0.0 140,117 - HMPREF1058_RS18500 0.33 -0.7 140,137 + HMPREF1058_RS18500 0.38 -1.5 140,241 + HMPREF1058_RS18500 0.65 -0.3 140,241 + +1.6 140,242 - HMPREF1058_RS18500 0.65 +0.1 140,351 - +0.6 140,353 - -0.3 140,379 + +1.0 140,379 + -0.8 140,380 - -0.7 140,380 - -0.3 140,383 + +1.1 140,438 + HMPREF1058_RS18495 0.22 -1.5 140,438 + HMPREF1058_RS18495 0.22 -0.1 140,605 + HMPREF1058_RS18495 0.79 +0.1 140,623 + HMPREF1058_RS18495 0.85 -0.6 140,625 + HMPREF1058_RS18495 0.86 +0.3 140,626 - HMPREF1058_RS18495 0.86 -2.4 140,680 + +0.3 140,695 - -0.4 140,699 + +1.4 140,753 + +0.4 140,755 + +1.0 140,756 - -1.2 140,831 - +0.0 140,852 + -0.4 140,871 + -1.0 140,910 + -0.8
Or see this region's nucleotide sequence