Experiment: pectate 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS18070 and HMPREF1058_RS18065 are separated by 18 nucleotides HMPREF1058_RS18065 and HMPREF1058_RS18060 are separated by 41 nucleotides
HMPREF1058_RS18070: HMPREF1058_RS18070 - ABC transporter permease, at 264,422 to 265,642
_RS18070
HMPREF1058_RS18065: HMPREF1058_RS18065 - ABC transporter ATP-binding protein, at 265,661 to 266,404
_RS18065
HMPREF1058_RS18060: HMPREF1058_RS18060 - efflux RND transporter periplasmic adaptor subunit, at 266,446 to 267,669
_RS18060
Position (kb) 265
266
267 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 264.669 kb on - strand, within HMPREF1058_RS18070 at 264.728 kb on + strand, within HMPREF1058_RS18070 at 264.729 kb on - strand, within HMPREF1058_RS18070 at 264.732 kb on + strand, within HMPREF1058_RS18070 at 264.733 kb on - strand, within HMPREF1058_RS18070 at 264.733 kb on - strand, within HMPREF1058_RS18070 at 264.774 kb on - strand at 264.784 kb on + strand, within HMPREF1058_RS18070 at 264.785 kb on - strand, within HMPREF1058_RS18070 at 264.829 kb on + strand, within HMPREF1058_RS18070 at 264.833 kb on - strand, within HMPREF1058_RS18070 at 264.889 kb on + strand, within HMPREF1058_RS18070 at 264.889 kb on + strand, within HMPREF1058_RS18070 at 264.890 kb on - strand, within HMPREF1058_RS18070 at 264.940 kb on + strand, within HMPREF1058_RS18070 at 264.975 kb on - strand, within HMPREF1058_RS18070 at 264.978 kb on + strand, within HMPREF1058_RS18070 at 265.025 kb on + strand, within HMPREF1058_RS18070 at 265.028 kb on + strand, within HMPREF1058_RS18070 at 265.248 kb on - strand, within HMPREF1058_RS18070 at 265.265 kb on - strand, within HMPREF1058_RS18070 at 265.265 kb on - strand, within HMPREF1058_RS18070 at 265.268 kb on + strand, within HMPREF1058_RS18070 at 265.268 kb on + strand, within HMPREF1058_RS18070 at 265.291 kb on - strand, within HMPREF1058_RS18070 at 265.353 kb on + strand, within HMPREF1058_RS18070 at 265.354 kb on - strand, within HMPREF1058_RS18070 at 265.357 kb on + strand, within HMPREF1058_RS18070 at 265.460 kb on - strand, within HMPREF1058_RS18070 at 265.532 kb on - strand at 265.730 kb on - strand at 265.730 kb on - strand at 265.774 kb on + strand, within HMPREF1058_RS18065 at 265.981 kb on + strand at 266.068 kb on - strand, within HMPREF1058_RS18065 at 266.068 kb on - strand, within HMPREF1058_RS18065 at 266.121 kb on + strand, within HMPREF1058_RS18065 at 266.122 kb on - strand, within HMPREF1058_RS18065 at 266.282 kb on - strand, within HMPREF1058_RS18065 at 266.376 kb on - strand at 266.437 kb on + strand at 266.448 kb on - strand at 266.448 kb on - strand at 266.539 kb on - strand at 266.626 kb on + strand, within HMPREF1058_RS18060 at 266.652 kb on + strand, within HMPREF1058_RS18060 at 266.716 kb on + strand, within HMPREF1058_RS18060 at 266.717 kb on - strand, within HMPREF1058_RS18060 at 266.770 kb on - strand, within HMPREF1058_RS18060 at 266.784 kb on + strand, within HMPREF1058_RS18060 at 266.851 kb on + strand, within HMPREF1058_RS18060 at 266.858 kb on + strand, within HMPREF1058_RS18060 at 266.858 kb on + strand, within HMPREF1058_RS18060 at 266.866 kb on + strand, within HMPREF1058_RS18060 at 266.866 kb on + strand, within HMPREF1058_RS18060 at 266.867 kb on - strand, within HMPREF1058_RS18060 at 266.875 kb on - strand, within HMPREF1058_RS18060 at 266.913 kb on + strand, within HMPREF1058_RS18060 at 267.168 kb on - strand, within HMPREF1058_RS18060 at 267.324 kb on - strand, within HMPREF1058_RS18060 at 267.351 kb on - strand, within HMPREF1058_RS18060 at 267.351 kb on - strand, within HMPREF1058_RS18060
Per-strain Table
Position Strand Gene LocusTag Fraction pectate 2.5 mg/ml (C) remove 264,669 - HMPREF1058_RS18070 0.20 -0.8 264,728 + HMPREF1058_RS18070 0.25 +0.1 264,729 - HMPREF1058_RS18070 0.25 +0.9 264,732 + HMPREF1058_RS18070 0.25 -0.5 264,733 - HMPREF1058_RS18070 0.25 -0.5 264,733 - HMPREF1058_RS18070 0.25 +0.2 264,774 - -1.3 264,784 + HMPREF1058_RS18070 0.30 -0.3 264,785 - HMPREF1058_RS18070 0.30 -1.2 264,829 + HMPREF1058_RS18070 0.33 +0.5 264,833 - HMPREF1058_RS18070 0.34 +0.4 264,889 + HMPREF1058_RS18070 0.38 +0.6 264,889 + HMPREF1058_RS18070 0.38 +0.8 264,890 - HMPREF1058_RS18070 0.38 +0.3 264,940 + HMPREF1058_RS18070 0.42 -0.1 264,975 - HMPREF1058_RS18070 0.45 -0.2 264,978 + HMPREF1058_RS18070 0.46 +0.4 265,025 + HMPREF1058_RS18070 0.49 +0.4 265,028 + HMPREF1058_RS18070 0.50 +0.2 265,248 - HMPREF1058_RS18070 0.68 +1.2 265,265 - HMPREF1058_RS18070 0.69 -0.3 265,265 - HMPREF1058_RS18070 0.69 +0.7 265,268 + HMPREF1058_RS18070 0.69 -0.7 265,268 + HMPREF1058_RS18070 0.69 -0.6 265,291 - HMPREF1058_RS18070 0.71 +1.4 265,353 + HMPREF1058_RS18070 0.76 +0.4 265,354 - HMPREF1058_RS18070 0.76 -0.6 265,357 + HMPREF1058_RS18070 0.77 +0.3 265,460 - HMPREF1058_RS18070 0.85 +1.5 265,532 - -1.1 265,730 - -0.8 265,730 - -0.7 265,774 + HMPREF1058_RS18065 0.15 -0.5 265,981 + +0.8 266,068 - HMPREF1058_RS18065 0.55 -1.7 266,068 - HMPREF1058_RS18065 0.55 +1.0 266,121 + HMPREF1058_RS18065 0.62 +0.2 266,122 - HMPREF1058_RS18065 0.62 -2.3 266,282 - HMPREF1058_RS18065 0.83 -0.8 266,376 - -1.5 266,437 + -0.6 266,448 - -0.8 266,448 - +0.0 266,539 - +1.0 266,626 + HMPREF1058_RS18060 0.15 +1.2 266,652 + HMPREF1058_RS18060 0.17 +0.2 266,716 + HMPREF1058_RS18060 0.22 -1.2 266,717 - HMPREF1058_RS18060 0.22 -1.9 266,770 - HMPREF1058_RS18060 0.26 +1.0 266,784 + HMPREF1058_RS18060 0.28 -1.7 266,851 + HMPREF1058_RS18060 0.33 -0.4 266,858 + HMPREF1058_RS18060 0.34 -0.3 266,858 + HMPREF1058_RS18060 0.34 -0.5 266,866 + HMPREF1058_RS18060 0.34 -0.4 266,866 + HMPREF1058_RS18060 0.34 -0.3 266,867 - HMPREF1058_RS18060 0.34 -0.6 266,875 - HMPREF1058_RS18060 0.35 -0.5 266,913 + HMPREF1058_RS18060 0.38 +0.1 267,168 - HMPREF1058_RS18060 0.59 +0.9 267,324 - HMPREF1058_RS18060 0.72 +0.2 267,351 - HMPREF1058_RS18060 0.74 +3.2 267,351 - HMPREF1058_RS18060 0.74 +0.0
Or see this region's nucleotide sequence