Experiment: pectate 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS17820 and HMPREF1058_RS17815 are separated by 37 nucleotides HMPREF1058_RS17815 and HMPREF1058_RS17810 are separated by 14 nucleotides HMPREF1058_RS17810 and HMPREF1058_RS17805 are separated by 52 nucleotides
HMPREF1058_RS17820: HMPREF1058_RS17820 - energy-dependent translational throttle protein EttA, at 327,570 to 329,258
_RS17820
HMPREF1058_RS17815: HMPREF1058_RS17815 - MFS transporter, at 329,296 to 330,462
_RS17815
HMPREF1058_RS17810: HMPREF1058_RS17810 - 3-methyl-2-oxobutanoate hydroxymethyltransferase, at 330,477 to 331,298
_RS17810
HMPREF1058_RS17805: HMPREF1058_RS17805 - HAD family hydrolase, at 331,351 to 332,001
_RS17805
Position (kb) 329
330
331 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 328.900 kb on + strand, within HMPREF1058_RS17820 at 328.900 kb on + strand, within HMPREF1058_RS17820 at 328.901 kb on - strand at 328.929 kb on + strand, within HMPREF1058_RS17820 at 329.032 kb on + strand, within HMPREF1058_RS17820 at 329.033 kb on - strand, within HMPREF1058_RS17820 at 329.037 kb on + strand, within HMPREF1058_RS17820 at 329.169 kb on + strand at 329.174 kb on - strand at 329.174 kb on - strand at 329.188 kb on - strand at 329.217 kb on + strand at 329.266 kb on - strand at 329.268 kb on - strand at 329.270 kb on + strand at 329.273 kb on + strand at 329.283 kb on - strand at 329.283 kb on - strand at 329.283 kb on - strand at 329.349 kb on - strand at 329.395 kb on - strand at 329.395 kb on - strand at 329.421 kb on + strand, within HMPREF1058_RS17815 at 329.447 kb on - strand, within HMPREF1058_RS17815 at 329.582 kb on + strand, within HMPREF1058_RS17815 at 329.754 kb on + strand, within HMPREF1058_RS17815 at 329.755 kb on - strand, within HMPREF1058_RS17815 at 329.779 kb on - strand, within HMPREF1058_RS17815 at 329.967 kb on + strand, within HMPREF1058_RS17815 at 329.967 kb on + strand, within HMPREF1058_RS17815 at 329.968 kb on - strand, within HMPREF1058_RS17815 at 329.969 kb on + strand, within HMPREF1058_RS17815 at 329.969 kb on + strand, within HMPREF1058_RS17815 at 329.970 kb on - strand, within HMPREF1058_RS17815 at 330.075 kb on + strand, within HMPREF1058_RS17815 at 330.136 kb on + strand, within HMPREF1058_RS17815 at 330.158 kb on + strand, within HMPREF1058_RS17815 at 330.159 kb on - strand at 330.159 kb on - strand, within HMPREF1058_RS17815 at 330.159 kb on - strand, within HMPREF1058_RS17815 at 330.164 kb on + strand, within HMPREF1058_RS17815 at 330.167 kb on - strand, within HMPREF1058_RS17815 at 330.167 kb on - strand, within HMPREF1058_RS17815 at 330.239 kb on + strand, within HMPREF1058_RS17815 at 330.362 kb on + strand at 330.363 kb on - strand at 330.363 kb on - strand at 330.363 kb on - strand at 330.363 kb on - strand at 330.458 kb on + strand at 330.458 kb on + strand at 330.458 kb on + strand at 330.459 kb on - strand at 330.459 kb on - strand at 330.463 kb on - strand at 330.482 kb on - strand at 331.363 kb on - strand at 331.426 kb on + strand, within HMPREF1058_RS17805
Per-strain Table
Position Strand Gene LocusTag Fraction pectate 2.5 mg/ml (C) remove 328,900 + HMPREF1058_RS17820 0.79 +0.1 328,900 + HMPREF1058_RS17820 0.79 -0.8 328,901 - +3.0 328,929 + HMPREF1058_RS17820 0.80 +2.0 329,032 + HMPREF1058_RS17820 0.87 +0.1 329,033 - HMPREF1058_RS17820 0.87 +0.4 329,037 + HMPREF1058_RS17820 0.87 -1.7 329,169 + -1.2 329,174 - -0.4 329,174 - +0.4 329,188 - -0.1 329,217 + -0.6 329,266 - +0.5 329,268 - +0.3 329,270 + -0.0 329,273 + +1.1 329,283 - +0.5 329,283 - -0.8 329,283 - +0.9 329,349 - -1.3 329,395 - -1.2 329,395 - -0.2 329,421 + HMPREF1058_RS17815 0.11 -1.0 329,447 - HMPREF1058_RS17815 0.13 +0.2 329,582 + HMPREF1058_RS17815 0.25 -1.3 329,754 + HMPREF1058_RS17815 0.39 -0.2 329,755 - HMPREF1058_RS17815 0.39 -0.8 329,779 - HMPREF1058_RS17815 0.41 -0.9 329,967 + HMPREF1058_RS17815 0.57 +0.6 329,967 + HMPREF1058_RS17815 0.57 -0.8 329,968 - HMPREF1058_RS17815 0.58 -0.9 329,969 + HMPREF1058_RS17815 0.58 -2.9 329,969 + HMPREF1058_RS17815 0.58 +0.7 329,970 - HMPREF1058_RS17815 0.58 -2.7 330,075 + HMPREF1058_RS17815 0.67 -2.4 330,136 + HMPREF1058_RS17815 0.72 -1.8 330,158 + HMPREF1058_RS17815 0.74 +1.0 330,159 - -0.6 330,159 - HMPREF1058_RS17815 0.74 -2.1 330,159 - HMPREF1058_RS17815 0.74 -1.3 330,164 + HMPREF1058_RS17815 0.74 -1.6 330,167 - HMPREF1058_RS17815 0.75 -1.2 330,167 - HMPREF1058_RS17815 0.75 +0.1 330,239 + HMPREF1058_RS17815 0.81 +0.6 330,362 + +1.0 330,363 - -2.5 330,363 - -3.6 330,363 - -1.4 330,363 - -0.3 330,458 + -1.5 330,458 + -1.7 330,458 + +1.2 330,459 - -0.0 330,459 - -2.4 330,463 - -0.3 330,482 - -0.8 331,363 - -0.2 331,426 + HMPREF1058_RS17805 0.12 -1.8
Or see this region's nucleotide sequence