Experiment: pectate 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS17815 and HMPREF1058_RS17810 are separated by 14 nucleotides HMPREF1058_RS17810 and HMPREF1058_RS17805 are separated by 52 nucleotides HMPREF1058_RS17805 and HMPREF1058_RS17800 are separated by 89 nucleotides
HMPREF1058_RS17815: HMPREF1058_RS17815 - MFS transporter, at 329,296 to 330,462
_RS17815
HMPREF1058_RS17810: HMPREF1058_RS17810 - 3-methyl-2-oxobutanoate hydroxymethyltransferase, at 330,477 to 331,298
_RS17810
HMPREF1058_RS17805: HMPREF1058_RS17805 - HAD family hydrolase, at 331,351 to 332,001
_RS17805
HMPREF1058_RS17800: HMPREF1058_RS17800 - MATE family efflux transporter, at 332,091 to 333,443
_RS17800
Position (kb) 331
332
333 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 330.362 kb on + strand at 330.363 kb on - strand at 330.363 kb on - strand at 330.363 kb on - strand at 330.363 kb on - strand at 330.458 kb on + strand at 330.458 kb on + strand at 330.458 kb on + strand at 330.459 kb on - strand at 330.459 kb on - strand at 330.463 kb on - strand at 330.482 kb on - strand at 331.363 kb on - strand at 331.426 kb on + strand, within HMPREF1058_RS17805 at 331.650 kb on + strand, within HMPREF1058_RS17805 at 331.651 kb on - strand, within HMPREF1058_RS17805 at 331.654 kb on + strand, within HMPREF1058_RS17805 at 331.655 kb on - strand, within HMPREF1058_RS17805 at 331.693 kb on - strand, within HMPREF1058_RS17805 at 331.693 kb on - strand, within HMPREF1058_RS17805 at 331.697 kb on - strand, within HMPREF1058_RS17805 at 331.697 kb on - strand, within HMPREF1058_RS17805 at 331.697 kb on - strand, within HMPREF1058_RS17805 at 331.756 kb on - strand, within HMPREF1058_RS17805 at 331.756 kb on - strand, within HMPREF1058_RS17805 at 331.838 kb on + strand, within HMPREF1058_RS17805 at 331.925 kb on - strand, within HMPREF1058_RS17805 at 331.926 kb on + strand, within HMPREF1058_RS17805 at 331.927 kb on - strand, within HMPREF1058_RS17805 at 331.927 kb on - strand, within HMPREF1058_RS17805 at 331.927 kb on - strand, within HMPREF1058_RS17805 at 331.929 kb on + strand, within HMPREF1058_RS17805 at 331.930 kb on - strand, within HMPREF1058_RS17805 at 331.932 kb on - strand, within HMPREF1058_RS17805 at 332.113 kb on + strand at 332.213 kb on - strand at 332.513 kb on + strand, within HMPREF1058_RS17800 at 332.513 kb on + strand, within HMPREF1058_RS17800 at 332.513 kb on + strand, within HMPREF1058_RS17800 at 332.514 kb on - strand, within HMPREF1058_RS17800 at 332.516 kb on - strand, within HMPREF1058_RS17800 at 332.538 kb on + strand, within HMPREF1058_RS17800 at 332.538 kb on + strand, within HMPREF1058_RS17800 at 332.539 kb on - strand, within HMPREF1058_RS17800 at 332.543 kb on - strand, within HMPREF1058_RS17800 at 332.562 kb on - strand, within HMPREF1058_RS17800 at 332.631 kb on - strand, within HMPREF1058_RS17800 at 332.756 kb on + strand, within HMPREF1058_RS17800 at 332.823 kb on - strand, within HMPREF1058_RS17800 at 332.867 kb on + strand, within HMPREF1058_RS17800 at 333.000 kb on + strand, within HMPREF1058_RS17800
Per-strain Table
Position Strand Gene LocusTag Fraction pectate 2.5 mg/ml (C) remove 330,362 + +1.0 330,363 - -2.5 330,363 - -3.6 330,363 - -1.4 330,363 - -0.3 330,458 + -1.5 330,458 + -1.7 330,458 + +1.2 330,459 - -0.0 330,459 - -2.4 330,463 - -0.3 330,482 - -0.8 331,363 - -0.2 331,426 + HMPREF1058_RS17805 0.12 -1.8 331,650 + HMPREF1058_RS17805 0.46 -1.2 331,651 - HMPREF1058_RS17805 0.46 -1.0 331,654 + HMPREF1058_RS17805 0.47 +1.0 331,655 - HMPREF1058_RS17805 0.47 +0.2 331,693 - HMPREF1058_RS17805 0.53 -0.9 331,693 - HMPREF1058_RS17805 0.53 -1.0 331,697 - HMPREF1058_RS17805 0.53 -1.5 331,697 - HMPREF1058_RS17805 0.53 -1.5 331,697 - HMPREF1058_RS17805 0.53 -1.4 331,756 - HMPREF1058_RS17805 0.62 -0.5 331,756 - HMPREF1058_RS17805 0.62 +0.6 331,838 + HMPREF1058_RS17805 0.75 -0.8 331,925 - HMPREF1058_RS17805 0.88 +0.5 331,926 + HMPREF1058_RS17805 0.88 +1.2 331,927 - HMPREF1058_RS17805 0.88 -1.5 331,927 - HMPREF1058_RS17805 0.88 +0.8 331,927 - HMPREF1058_RS17805 0.88 +0.4 331,929 + HMPREF1058_RS17805 0.89 -1.5 331,930 - HMPREF1058_RS17805 0.89 -0.7 331,932 - HMPREF1058_RS17805 0.89 -0.4 332,113 + -1.2 332,213 - +0.4 332,513 + HMPREF1058_RS17800 0.31 -2.5 332,513 + HMPREF1058_RS17800 0.31 +0.1 332,513 + HMPREF1058_RS17800 0.31 +0.3 332,514 - HMPREF1058_RS17800 0.31 +1.2 332,516 - HMPREF1058_RS17800 0.31 -2.8 332,538 + HMPREF1058_RS17800 0.33 -0.7 332,538 + HMPREF1058_RS17800 0.33 +0.2 332,539 - HMPREF1058_RS17800 0.33 +0.3 332,543 - HMPREF1058_RS17800 0.33 +0.1 332,562 - HMPREF1058_RS17800 0.35 -0.9 332,631 - HMPREF1058_RS17800 0.40 -0.0 332,756 + HMPREF1058_RS17800 0.49 -1.4 332,823 - HMPREF1058_RS17800 0.54 -0.0 332,867 + HMPREF1058_RS17800 0.57 +0.1 333,000 + HMPREF1058_RS17800 0.67 -0.9
Or see this region's nucleotide sequence