Experiment: pectate 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS17450 and HMPREF1058_RS17445 are separated by 346 nucleotides HMPREF1058_RS17445 and HMPREF1058_RS17440 are separated by 28 nucleotides HMPREF1058_RS17440 and HMPREF1058_RS17435 are separated by 3 nucleotides HMPREF1058_RS17435 and HMPREF1058_RS17430 are separated by 6 nucleotides
HMPREF1058_RS17450: HMPREF1058_RS17450 - site-specific integrase, at 441,400 to 442,329
_RS17450
HMPREF1058_RS17445: HMPREF1058_RS17445 - DUF3575 domain-containing protein, at 442,676 to 443,242
_RS17445
HMPREF1058_RS17440: HMPREF1058_RS17440 - DUF3868 domain-containing protein, at 443,271 to 444,365
_RS17440
HMPREF1058_RS17435: HMPREF1058_RS17435 - DUF3575 domain-containing protein, at 444,369 to 444,941
_RS17435
HMPREF1058_RS17430: HMPREF1058_RS17430 - DUF3868 domain-containing protein, at 444,948 to 446,357
_RS17430
Position (kb) 443
444
445 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 442.498 kb on - strand at 442.498 kb on - strand at 442.633 kb on - strand at 442.644 kb on - strand at 442.688 kb on + strand at 442.720 kb on + strand at 442.732 kb on + strand at 442.750 kb on + strand, within HMPREF1058_RS17445 at 442.813 kb on - strand, within HMPREF1058_RS17445 at 442.813 kb on - strand, within HMPREF1058_RS17445 at 442.853 kb on + strand, within HMPREF1058_RS17445 at 442.853 kb on + strand, within HMPREF1058_RS17445 at 442.855 kb on + strand, within HMPREF1058_RS17445 at 442.914 kb on - strand, within HMPREF1058_RS17445 at 442.980 kb on - strand, within HMPREF1058_RS17445 at 443.060 kb on + strand, within HMPREF1058_RS17445 at 443.060 kb on + strand, within HMPREF1058_RS17445 at 443.109 kb on + strand, within HMPREF1058_RS17445 at 443.109 kb on + strand, within HMPREF1058_RS17445 at 443.110 kb on - strand, within HMPREF1058_RS17445 at 443.110 kb on - strand, within HMPREF1058_RS17445 at 443.136 kb on - strand, within HMPREF1058_RS17445 at 443.217 kb on + strand at 443.240 kb on + strand at 443.264 kb on - strand at 443.291 kb on - strand at 443.305 kb on + strand at 443.576 kb on - strand, within HMPREF1058_RS17440 at 443.576 kb on - strand, within HMPREF1058_RS17440 at 443.588 kb on + strand, within HMPREF1058_RS17440 at 443.758 kb on + strand, within HMPREF1058_RS17440 at 443.759 kb on - strand, within HMPREF1058_RS17440 at 443.759 kb on - strand, within HMPREF1058_RS17440 at 443.814 kb on - strand, within HMPREF1058_RS17440 at 443.913 kb on + strand, within HMPREF1058_RS17440 at 443.914 kb on - strand, within HMPREF1058_RS17440 at 443.917 kb on + strand, within HMPREF1058_RS17440 at 443.917 kb on + strand, within HMPREF1058_RS17440 at 444.033 kb on + strand at 444.104 kb on - strand, within HMPREF1058_RS17440 at 444.237 kb on + strand, within HMPREF1058_RS17440 at 444.261 kb on + strand at 444.319 kb on - strand at 444.359 kb on - strand at 444.363 kb on + strand at 444.364 kb on - strand at 444.752 kb on - strand, within HMPREF1058_RS17435 at 444.812 kb on - strand, within HMPREF1058_RS17435 at 444.822 kb on + strand, within HMPREF1058_RS17435 at 444.823 kb on - strand, within HMPREF1058_RS17435 at 444.825 kb on - strand, within HMPREF1058_RS17435 at 444.825 kb on - strand, within HMPREF1058_RS17435 at 444.841 kb on - strand, within HMPREF1058_RS17435 at 444.928 kb on - strand at 444.928 kb on - strand at 444.955 kb on - strand at 444.963 kb on + strand at 444.963 kb on + strand at 444.964 kb on - strand at 444.968 kb on + strand at 444.968 kb on + strand at 445.076 kb on - strand at 445.129 kb on + strand, within HMPREF1058_RS17430 at 445.156 kb on + strand, within HMPREF1058_RS17430 at 445.185 kb on + strand, within HMPREF1058_RS17430 at 445.209 kb on - strand, within HMPREF1058_RS17430 at 445.288 kb on + strand, within HMPREF1058_RS17430
Per-strain Table
Position Strand Gene LocusTag Fraction pectate 2.5 mg/ml (C) remove 442,498 - +1.6 442,498 - +0.4 442,633 - +1.0 442,644 - -0.0 442,688 + -0.6 442,720 + -1.8 442,732 + +1.5 442,750 + HMPREF1058_RS17445 0.13 -3.7 442,813 - HMPREF1058_RS17445 0.24 +0.2 442,813 - HMPREF1058_RS17445 0.24 -1.2 442,853 + HMPREF1058_RS17445 0.31 -1.3 442,853 + HMPREF1058_RS17445 0.31 -0.1 442,855 + HMPREF1058_RS17445 0.32 -1.0 442,914 - HMPREF1058_RS17445 0.42 +0.7 442,980 - HMPREF1058_RS17445 0.54 -0.3 443,060 + HMPREF1058_RS17445 0.68 +0.1 443,060 + HMPREF1058_RS17445 0.68 +0.7 443,109 + HMPREF1058_RS17445 0.76 -0.6 443,109 + HMPREF1058_RS17445 0.76 +0.2 443,110 - HMPREF1058_RS17445 0.77 -1.7 443,110 - HMPREF1058_RS17445 0.77 -0.8 443,136 - HMPREF1058_RS17445 0.81 +0.7 443,217 + +0.2 443,240 + +0.0 443,264 - -0.7 443,291 - -1.0 443,305 + +0.8 443,576 - HMPREF1058_RS17440 0.28 +1.0 443,576 - HMPREF1058_RS17440 0.28 -2.5 443,588 + HMPREF1058_RS17440 0.29 -1.3 443,758 + HMPREF1058_RS17440 0.44 -0.4 443,759 - HMPREF1058_RS17440 0.45 -0.2 443,759 - HMPREF1058_RS17440 0.45 -0.9 443,814 - HMPREF1058_RS17440 0.50 -0.8 443,913 + HMPREF1058_RS17440 0.59 -1.9 443,914 - HMPREF1058_RS17440 0.59 -0.1 443,917 + HMPREF1058_RS17440 0.59 +1.2 443,917 + HMPREF1058_RS17440 0.59 -0.3 444,033 + -1.2 444,104 - HMPREF1058_RS17440 0.76 -1.0 444,237 + HMPREF1058_RS17440 0.88 -2.1 444,261 + -2.5 444,319 - +0.4 444,359 - -0.3 444,363 + +0.3 444,364 - +0.3 444,752 - HMPREF1058_RS17435 0.67 +0.2 444,812 - HMPREF1058_RS17435 0.77 -0.3 444,822 + HMPREF1058_RS17435 0.79 -0.5 444,823 - HMPREF1058_RS17435 0.79 -0.3 444,825 - HMPREF1058_RS17435 0.80 +0.1 444,825 - HMPREF1058_RS17435 0.80 +2.4 444,841 - HMPREF1058_RS17435 0.82 -0.6 444,928 - +1.1 444,928 - -0.8 444,955 - -0.6 444,963 + +0.6 444,963 + +0.7 444,964 - -1.9 444,968 + -0.2 444,968 + -0.3 445,076 - -1.1 445,129 + HMPREF1058_RS17430 0.13 -0.8 445,156 + HMPREF1058_RS17430 0.15 +0.7 445,185 + HMPREF1058_RS17430 0.17 -1.2 445,209 - HMPREF1058_RS17430 0.19 +0.4 445,288 + HMPREF1058_RS17430 0.24 +0.5
Or see this region's nucleotide sequence