Experiment: pectate 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS17400 and HMPREF1058_RS17395 are separated by 108 nucleotides HMPREF1058_RS17395 and HMPREF1058_RS21415 overlap by 4 nucleotides HMPREF1058_RS21415 and HMPREF1058_RS17390 are separated by 40 nucleotides HMPREF1058_RS17390 and HMPREF1058_RS17385 are separated by 248 nucleotides
HMPREF1058_RS17400: HMPREF1058_RS17400 - tyrosine-protein kinase, at 452,443 to 454,854
_RS17400
HMPREF1058_RS17395: HMPREF1058_RS17395 - N-acetylmuramoyl-L-alanine amidase, at 454,963 to 455,412
_RS17395
HMPREF1058_RS21415: HMPREF1058_RS21415 - smalltalk protein, at 455,409 to 455,510
_RS21415
HMPREF1058_RS17390: HMPREF1058_RS17390 - HU family DNA-binding protein, at 455,551 to 455,979
_RS17390
HMPREF1058_RS17385: HMPREF1058_RS17385 - DUF4248 domain-containing protein, at 456,228 to 456,458
_RS17385
Position (kb) 454
455
456 Strain fitness (log2 ratio) -2
-1
0
1
2 at 453.998 kb on - strand, within HMPREF1058_RS17400 at 454.000 kb on - strand, within HMPREF1058_RS17400 at 454.080 kb on - strand, within HMPREF1058_RS17400 at 454.080 kb on - strand, within HMPREF1058_RS17400 at 454.118 kb on + strand, within HMPREF1058_RS17400 at 454.118 kb on + strand, within HMPREF1058_RS17400 at 454.166 kb on + strand, within HMPREF1058_RS17400 at 454.178 kb on + strand, within HMPREF1058_RS17400 at 454.183 kb on + strand, within HMPREF1058_RS17400 at 454.183 kb on + strand, within HMPREF1058_RS17400 at 454.183 kb on + strand at 454.184 kb on - strand, within HMPREF1058_RS17400 at 454.184 kb on - strand, within HMPREF1058_RS17400 at 454.186 kb on - strand, within HMPREF1058_RS17400 at 454.186 kb on - strand, within HMPREF1058_RS17400 at 454.470 kb on + strand, within HMPREF1058_RS17400 at 454.471 kb on - strand, within HMPREF1058_RS17400 at 454.550 kb on - strand, within HMPREF1058_RS17400 at 454.551 kb on + strand, within HMPREF1058_RS17400 at 454.627 kb on + strand at 454.627 kb on + strand at 454.627 kb on + strand at 454.627 kb on + strand at 454.628 kb on - strand at 454.645 kb on + strand at 454.710 kb on - strand at 454.710 kb on - strand at 454.714 kb on - strand at 454.778 kb on - strand at 455.060 kb on - strand, within HMPREF1058_RS17395 at 455.192 kb on + strand, within HMPREF1058_RS17395 at 455.217 kb on + strand, within HMPREF1058_RS17395 at 455.501 kb on + strand at 455.553 kb on - strand at 455.687 kb on + strand, within HMPREF1058_RS17390 at 455.687 kb on + strand, within HMPREF1058_RS17390 at 455.688 kb on - strand, within HMPREF1058_RS17390 at 455.688 kb on - strand, within HMPREF1058_RS17390 at 455.688 kb on - strand, within HMPREF1058_RS17390 at 455.756 kb on - strand, within HMPREF1058_RS17390 at 455.879 kb on - strand, within HMPREF1058_RS17390 at 456.265 kb on - strand, within HMPREF1058_RS17385 at 456.290 kb on - strand, within HMPREF1058_RS17385 at 456.290 kb on - strand, within HMPREF1058_RS17385 at 456.290 kb on - strand, within HMPREF1058_RS17385 at 456.292 kb on - strand, within HMPREF1058_RS17385
Per-strain Table
Position Strand Gene LocusTag Fraction pectate 2.5 mg/ml (C) remove 453,998 - HMPREF1058_RS17400 0.64 -0.5 454,000 - HMPREF1058_RS17400 0.65 -0.3 454,080 - HMPREF1058_RS17400 0.68 +2.2 454,080 - HMPREF1058_RS17400 0.68 -0.6 454,118 + HMPREF1058_RS17400 0.69 -1.3 454,118 + HMPREF1058_RS17400 0.69 -1.3 454,166 + HMPREF1058_RS17400 0.71 +2.0 454,178 + HMPREF1058_RS17400 0.72 +0.1 454,183 + HMPREF1058_RS17400 0.72 -0.7 454,183 + HMPREF1058_RS17400 0.72 +0.1 454,183 + +2.7 454,184 - HMPREF1058_RS17400 0.72 -0.2 454,184 - HMPREF1058_RS17400 0.72 +1.0 454,186 - HMPREF1058_RS17400 0.72 -0.4 454,186 - HMPREF1058_RS17400 0.72 -0.5 454,470 + HMPREF1058_RS17400 0.84 -1.2 454,471 - HMPREF1058_RS17400 0.84 -2.2 454,550 - HMPREF1058_RS17400 0.87 +0.2 454,551 + HMPREF1058_RS17400 0.87 -0.8 454,627 + -0.4 454,627 + -2.0 454,627 + -1.5 454,627 + +0.7 454,628 - -0.5 454,645 + -1.9 454,710 - +0.5 454,710 - -0.5 454,714 - -0.0 454,778 - +2.7 455,060 - HMPREF1058_RS17395 0.22 -0.6 455,192 + HMPREF1058_RS17395 0.51 -1.2 455,217 + HMPREF1058_RS17395 0.56 -1.1 455,501 + -1.0 455,553 - +1.0 455,687 + HMPREF1058_RS17390 0.32 -1.6 455,687 + HMPREF1058_RS17390 0.32 +2.0 455,688 - HMPREF1058_RS17390 0.32 +0.4 455,688 - HMPREF1058_RS17390 0.32 +1.0 455,688 - HMPREF1058_RS17390 0.32 -0.2 455,756 - HMPREF1058_RS17390 0.48 -0.8 455,879 - HMPREF1058_RS17390 0.76 +1.3 456,265 - HMPREF1058_RS17385 0.16 -1.1 456,290 - HMPREF1058_RS17385 0.27 +0.4 456,290 - HMPREF1058_RS17385 0.27 +0.1 456,290 - HMPREF1058_RS17385 0.27 -1.8 456,292 - HMPREF1058_RS17385 0.28 -0.3
Or see this region's nucleotide sequence