Experiment: pectate 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS17205 and HMPREF1058_RS17200 are separated by 3 nucleotides HMPREF1058_RS17200 and HMPREF1058_RS17195 are separated by 1 nucleotides HMPREF1058_RS17195 and HMPREF1058_RS17190 overlap by 53 nucleotides HMPREF1058_RS17190 and HMPREF1058_RS17185 are separated by 3 nucleotides
HMPREF1058_RS17205: HMPREF1058_RS17205 - DUF4199 domain-containing protein, at 504,571 to 505,104
_RS17205
HMPREF1058_RS17200: HMPREF1058_RS17200 - glycosyltransferase family 2 protein, at 505,108 to 506,061
_RS17200
HMPREF1058_RS17195: HMPREF1058_RS17195 - hypothetical protein, at 506,063 to 506,611
_RS17195
HMPREF1058_RS17190: HMPREF1058_RS17190 - hypothetical protein, at 506,559 to 507,260
_RS17190
HMPREF1058_RS17185: HMPREF1058_RS17185 - manganese efflux pump, at 507,264 to 507,836
_RS17185
Position (kb) 506
507 Strain fitness (log2 ratio) -2
-1
0
1
2 at 506.073 kb on + strand at 506.083 kb on + strand at 506.205 kb on + strand, within HMPREF1058_RS17195 at 506.369 kb on + strand, within HMPREF1058_RS17195 at 506.450 kb on + strand, within HMPREF1058_RS17195 at 506.463 kb on + strand, within HMPREF1058_RS17195 at 506.516 kb on + strand, within HMPREF1058_RS17195 at 506.696 kb on + strand, within HMPREF1058_RS17190 at 506.696 kb on + strand, within HMPREF1058_RS17190 at 506.750 kb on + strand, within HMPREF1058_RS17190 at 506.750 kb on + strand, within HMPREF1058_RS17190 at 506.852 kb on + strand, within HMPREF1058_RS17190 at 506.854 kb on + strand, within HMPREF1058_RS17190 at 506.854 kb on + strand, within HMPREF1058_RS17190 at 506.855 kb on - strand at 506.938 kb on + strand, within HMPREF1058_RS17190 at 506.950 kb on + strand at 506.983 kb on + strand, within HMPREF1058_RS17190 at 507.039 kb on + strand, within HMPREF1058_RS17190 at 507.094 kb on + strand, within HMPREF1058_RS17190 at 507.243 kb on + strand at 507.341 kb on + strand, within HMPREF1058_RS17185 at 507.512 kb on + strand, within HMPREF1058_RS17185 at 507.590 kb on + strand, within HMPREF1058_RS17185
Per-strain Table
Position Strand Gene LocusTag Fraction pectate 2.5 mg/ml (C) remove 506,073 + +2.0 506,083 + -0.3 506,205 + HMPREF1058_RS17195 0.26 -0.6 506,369 + HMPREF1058_RS17195 0.56 -1.2 506,450 + HMPREF1058_RS17195 0.70 -0.6 506,463 + HMPREF1058_RS17195 0.73 -0.5 506,516 + HMPREF1058_RS17195 0.83 -0.6 506,696 + HMPREF1058_RS17190 0.20 +0.5 506,696 + HMPREF1058_RS17190 0.20 -0.6 506,750 + HMPREF1058_RS17190 0.27 -0.6 506,750 + HMPREF1058_RS17190 0.27 -0.1 506,852 + HMPREF1058_RS17190 0.42 -0.5 506,854 + HMPREF1058_RS17190 0.42 -2.4 506,854 + HMPREF1058_RS17190 0.42 -0.9 506,855 - -1.0 506,938 + HMPREF1058_RS17190 0.54 -0.1 506,950 + +0.5 506,983 + HMPREF1058_RS17190 0.60 -0.7 507,039 + HMPREF1058_RS17190 0.68 -0.3 507,094 + HMPREF1058_RS17190 0.76 +0.7 507,243 + -0.7 507,341 + HMPREF1058_RS17185 0.13 -0.4 507,512 + HMPREF1058_RS17185 0.43 +0.1 507,590 + HMPREF1058_RS17185 0.57 -0.5
Or see this region's nucleotide sequence