Experiment: pectate 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS17165 and HMPREF1058_RS17160 are separated by 13 nucleotides HMPREF1058_RS17160 and HMPREF1058_RS17155 are separated by 4 nucleotides HMPREF1058_RS17155 and HMPREF1058_RS17150 are separated by 14 nucleotides
HMPREF1058_RS17165: HMPREF1058_RS17165 - M3 family metallopeptidase, at 510,650 to 512,692
_RS17165
HMPREF1058_RS17160: HMPREF1058_RS17160 - DUF4847 family protein, at 512,706 to 513,200
_RS17160
HMPREF1058_RS17155: HMPREF1058_RS17155 - dCMP deaminase family protein, at 513,205 to 513,639
_RS17155
HMPREF1058_RS17150: HMPREF1058_RS17150 - S41 family peptidase, at 513,654 to 515,402
_RS17150
Position (kb) 513
514 Strain fitness (log2 ratio) -2
-1
0
1
2 at 512.288 kb on + strand at 512.336 kb on + strand, within HMPREF1058_RS17165 at 512.337 kb on - strand, within HMPREF1058_RS17165 at 512.376 kb on - strand, within HMPREF1058_RS17165 at 512.406 kb on + strand, within HMPREF1058_RS17165 at 512.452 kb on + strand, within HMPREF1058_RS17165 at 512.452 kb on + strand, within HMPREF1058_RS17165 at 512.625 kb on - strand at 512.714 kb on - strand at 512.714 kb on - strand at 512.727 kb on + strand at 512.729 kb on + strand at 512.729 kb on + strand at 512.729 kb on + strand at 512.730 kb on - strand at 512.731 kb on + strand at 512.734 kb on + strand at 512.753 kb on - strand at 512.865 kb on + strand, within HMPREF1058_RS17160 at 512.866 kb on - strand, within HMPREF1058_RS17160 at 512.866 kb on - strand, within HMPREF1058_RS17160 at 512.966 kb on + strand, within HMPREF1058_RS17160 at 513.112 kb on + strand, within HMPREF1058_RS17160 at 513.145 kb on + strand, within HMPREF1058_RS17160 at 513.185 kb on + strand at 513.185 kb on + strand at 513.185 kb on + strand at 513.186 kb on - strand at 513.186 kb on - strand at 513.203 kb on + strand at 513.204 kb on - strand at 513.247 kb on + strand at 513.264 kb on + strand, within HMPREF1058_RS17155 at 513.283 kb on + strand, within HMPREF1058_RS17155 at 513.347 kb on - strand, within HMPREF1058_RS17155 at 513.414 kb on - strand, within HMPREF1058_RS17155 at 513.446 kb on + strand, within HMPREF1058_RS17155 at 513.484 kb on + strand, within HMPREF1058_RS17155 at 513.485 kb on - strand, within HMPREF1058_RS17155 at 513.485 kb on - strand, within HMPREF1058_RS17155 at 513.506 kb on + strand, within HMPREF1058_RS17155 at 513.507 kb on - strand, within HMPREF1058_RS17155 at 513.607 kb on - strand at 513.648 kb on - strand at 513.653 kb on + strand at 513.700 kb on + strand at 513.763 kb on - strand at 513.776 kb on + strand at 513.829 kb on + strand, within HMPREF1058_RS17150 at 513.830 kb on - strand, within HMPREF1058_RS17150 at 513.833 kb on + strand, within HMPREF1058_RS17150 at 513.833 kb on + strand, within HMPREF1058_RS17150 at 513.834 kb on - strand, within HMPREF1058_RS17150 at 513.834 kb on - strand, within HMPREF1058_RS17150 at 513.866 kb on + strand, within HMPREF1058_RS17150 at 513.866 kb on + strand, within HMPREF1058_RS17150 at 513.907 kb on - strand, within HMPREF1058_RS17150 at 513.980 kb on + strand, within HMPREF1058_RS17150 at 513.995 kb on + strand, within HMPREF1058_RS17150 at 514.006 kb on + strand, within HMPREF1058_RS17150 at 514.006 kb on + strand, within HMPREF1058_RS17150 at 514.069 kb on + strand, within HMPREF1058_RS17150 at 514.069 kb on + strand, within HMPREF1058_RS17150 at 514.113 kb on + strand, within HMPREF1058_RS17150 at 514.113 kb on + strand, within HMPREF1058_RS17150 at 514.237 kb on + strand, within HMPREF1058_RS17150 at 514.277 kb on - strand, within HMPREF1058_RS17150 at 514.392 kb on + strand, within HMPREF1058_RS17150 at 514.392 kb on + strand, within HMPREF1058_RS17150 at 514.393 kb on - strand, within HMPREF1058_RS17150 at 514.394 kb on + strand, within HMPREF1058_RS17150 at 514.394 kb on + strand, within HMPREF1058_RS17150 at 514.394 kb on + strand, within HMPREF1058_RS17150 at 514.395 kb on - strand, within HMPREF1058_RS17150 at 514.452 kb on + strand, within HMPREF1058_RS17150 at 514.488 kb on - strand, within HMPREF1058_RS17150
Per-strain Table
Position Strand Gene LocusTag Fraction pectate 2.5 mg/ml (C) remove 512,288 + +1.8 512,336 + HMPREF1058_RS17165 0.83 -0.2 512,337 - HMPREF1058_RS17165 0.83 -1.1 512,376 - HMPREF1058_RS17165 0.84 -0.4 512,406 + HMPREF1058_RS17165 0.86 -0.2 512,452 + HMPREF1058_RS17165 0.88 +1.5 512,452 + HMPREF1058_RS17165 0.88 -1.4 512,625 - -2.4 512,714 - -0.4 512,714 - -1.6 512,727 + -0.3 512,729 + -0.1 512,729 + +1.9 512,729 + +1.2 512,730 - -0.5 512,731 + +1.0 512,734 + +0.2 512,753 - -1.6 512,865 + HMPREF1058_RS17160 0.32 +0.8 512,866 - HMPREF1058_RS17160 0.32 -0.1 512,866 - HMPREF1058_RS17160 0.32 +0.4 512,966 + HMPREF1058_RS17160 0.53 +0.1 513,112 + HMPREF1058_RS17160 0.82 +0.1 513,145 + HMPREF1058_RS17160 0.89 +0.4 513,185 + -0.1 513,185 + +0.6 513,185 + +1.0 513,186 - -1.2 513,186 - -0.4 513,203 + +1.6 513,204 - -1.2 513,247 + -1.1 513,264 + HMPREF1058_RS17155 0.14 -1.8 513,283 + HMPREF1058_RS17155 0.18 -2.1 513,347 - HMPREF1058_RS17155 0.33 -0.4 513,414 - HMPREF1058_RS17155 0.48 -0.1 513,446 + HMPREF1058_RS17155 0.55 +0.9 513,484 + HMPREF1058_RS17155 0.64 -1.4 513,485 - HMPREF1058_RS17155 0.64 -1.8 513,485 - HMPREF1058_RS17155 0.64 -0.1 513,506 + HMPREF1058_RS17155 0.69 -1.4 513,507 - HMPREF1058_RS17155 0.69 -1.5 513,607 - +0.4 513,648 - +0.4 513,653 + +1.3 513,700 + -0.2 513,763 - +0.8 513,776 + +1.9 513,829 + HMPREF1058_RS17150 0.10 -0.3 513,830 - HMPREF1058_RS17150 0.10 +0.8 513,833 + HMPREF1058_RS17150 0.10 -0.5 513,833 + HMPREF1058_RS17150 0.10 +1.2 513,834 - HMPREF1058_RS17150 0.10 -0.9 513,834 - HMPREF1058_RS17150 0.10 -0.6 513,866 + HMPREF1058_RS17150 0.12 -0.6 513,866 + HMPREF1058_RS17150 0.12 -0.5 513,907 - HMPREF1058_RS17150 0.14 -0.3 513,980 + HMPREF1058_RS17150 0.19 +1.1 513,995 + HMPREF1058_RS17150 0.19 -0.4 514,006 + HMPREF1058_RS17150 0.20 +0.3 514,006 + HMPREF1058_RS17150 0.20 -1.6 514,069 + HMPREF1058_RS17150 0.24 -2.1 514,069 + HMPREF1058_RS17150 0.24 -0.0 514,113 + HMPREF1058_RS17150 0.26 +1.6 514,113 + HMPREF1058_RS17150 0.26 -0.7 514,237 + HMPREF1058_RS17150 0.33 +0.1 514,277 - HMPREF1058_RS17150 0.36 -2.0 514,392 + HMPREF1058_RS17150 0.42 -0.7 514,392 + HMPREF1058_RS17150 0.42 -0.6 514,393 - HMPREF1058_RS17150 0.42 +0.4 514,394 + HMPREF1058_RS17150 0.42 +0.6 514,394 + HMPREF1058_RS17150 0.42 +0.4 514,394 + HMPREF1058_RS17150 0.42 -1.1 514,395 - HMPREF1058_RS17150 0.42 +0.4 514,452 + HMPREF1058_RS17150 0.46 +1.6 514,488 - HMPREF1058_RS17150 0.48 -1.4
Or see this region's nucleotide sequence