Experiment: pectate 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS17135 and HMPREF1058_RS17130 are separated by 152 nucleotides HMPREF1058_RS17130 and HMPREF1058_RS17125 are separated by 92 nucleotides HMPREF1058_RS17125 and HMPREF1058_RS17120 are separated by 111 nucleotides HMPREF1058_RS17120 and HMPREF1058_RS17115 are separated by 9 nucleotides
HMPREF1058_RS17135: HMPREF1058_RS17135 - DNA replication and repair protein RecF, at 516,309 to 517,424
_RS17135
HMPREF1058_RS17130: HMPREF1058_RS17130 - tetratricopeptide repeat protein, at 517,577 to 518,254
_RS17130
HMPREF1058_RS17125: HMPREF1058_RS17125 - 6,7-dimethyl-8-ribityllumazine synthase, at 518,347 to 518,853
_RS17125
HMPREF1058_RS17120: HMPREF1058_RS17120 - tRNA-Tyr, at 518,965 to 519,047
_RS17120
HMPREF1058_RS17115: HMPREF1058_RS17115 - tRNA-Gly, at 519,057 to 519,129
_RS17115
Position (kb) 517
518
519 Strain fitness (log2 ratio) -1
0
1 at 516.587 kb on - strand, within HMPREF1058_RS17135 at 516.717 kb on - strand, within HMPREF1058_RS17135 at 516.741 kb on - strand, within HMPREF1058_RS17135 at 516.789 kb on - strand, within HMPREF1058_RS17135 at 516.791 kb on - strand, within HMPREF1058_RS17135 at 516.791 kb on - strand, within HMPREF1058_RS17135 at 516.819 kb on - strand, within HMPREF1058_RS17135 at 516.960 kb on - strand, within HMPREF1058_RS17135 at 517.116 kb on - strand, within HMPREF1058_RS17135 at 517.172 kb on - strand, within HMPREF1058_RS17135 at 517.172 kb on - strand, within HMPREF1058_RS17135 at 517.172 kb on - strand, within HMPREF1058_RS17135 at 517.172 kb on - strand, within HMPREF1058_RS17135 at 517.174 kb on - strand, within HMPREF1058_RS17135 at 517.503 kb on + strand at 517.506 kb on + strand at 517.612 kb on + strand at 517.630 kb on + strand at 517.678 kb on + strand, within HMPREF1058_RS17130 at 517.696 kb on + strand, within HMPREF1058_RS17130 at 517.718 kb on + strand, within HMPREF1058_RS17130 at 517.749 kb on + strand, within HMPREF1058_RS17130 at 517.771 kb on + strand at 518.171 kb on + strand, within HMPREF1058_RS17130 at 518.204 kb on + strand at 518.224 kb on + strand at 518.224 kb on + strand at 518.224 kb on + strand at 518.228 kb on + strand at 518.228 kb on + strand at 518.228 kb on + strand at 518.265 kb on + strand at 518.301 kb on + strand at 518.301 kb on + strand at 519.133 kb on + strand at 519.148 kb on - strand at 519.148 kb on - strand at 519.191 kb on - strand at 519.222 kb on - strand at 519.222 kb on - strand at 519.230 kb on - strand at 519.231 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction pectate 2.5 mg/ml (C) remove 516,587 - HMPREF1058_RS17135 0.25 +0.1 516,717 - HMPREF1058_RS17135 0.37 +0.6 516,741 - HMPREF1058_RS17135 0.39 +1.1 516,789 - HMPREF1058_RS17135 0.43 -0.2 516,791 - HMPREF1058_RS17135 0.43 -0.4 516,791 - HMPREF1058_RS17135 0.43 -0.1 516,819 - HMPREF1058_RS17135 0.46 +0.0 516,960 - HMPREF1058_RS17135 0.58 +0.1 517,116 - HMPREF1058_RS17135 0.72 -1.6 517,172 - HMPREF1058_RS17135 0.77 +0.4 517,172 - HMPREF1058_RS17135 0.77 +0.9 517,172 - HMPREF1058_RS17135 0.77 -0.3 517,172 - HMPREF1058_RS17135 0.77 -1.6 517,174 - HMPREF1058_RS17135 0.78 +0.3 517,503 + -0.1 517,506 + -1.1 517,612 + -1.6 517,630 + -0.1 517,678 + HMPREF1058_RS17130 0.15 -0.1 517,696 + HMPREF1058_RS17130 0.18 -0.6 517,718 + HMPREF1058_RS17130 0.21 +0.7 517,749 + HMPREF1058_RS17130 0.25 -0.6 517,771 + -0.4 518,171 + HMPREF1058_RS17130 0.88 -0.6 518,204 + +0.1 518,224 + -0.6 518,224 + +0.3 518,224 + -0.2 518,228 + -0.9 518,228 + +0.6 518,228 + +0.0 518,265 + +0.8 518,301 + -1.6 518,301 + +1.2 519,133 + +0.9 519,148 - +0.9 519,148 - +0.7 519,191 - -0.2 519,222 - -0.3 519,222 - +0.5 519,230 - +1.1 519,231 + -0.9
Or see this region's nucleotide sequence