Experiment: pectate 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS17090 and HMPREF1058_RS17085 are separated by 16 nucleotides HMPREF1058_RS17085 and HMPREF1058_RS17080 overlap by 14 nucleotides HMPREF1058_RS17080 and HMPREF1058_RS17075 are separated by 166 nucleotides
HMPREF1058_RS17090: HMPREF1058_RS17090 - hypothetical protein, at 521,934 to 522,686
_RS17090
HMPREF1058_RS17085: HMPREF1058_RS17085 - LptE family protein, at 522,703 to 523,230
_RS17085
HMPREF1058_RS17080: HMPREF1058_RS17080 - sigma-54-dependent Fis family transcriptional regulator, at 523,217 to 524,482
_RS17080
HMPREF1058_RS17075: HMPREF1058_RS17075 - inositol-3-phosphate synthase, at 524,649 to 525,956
_RS17075
Position (kb) 523
524
525 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 522.234 kb on + strand, within HMPREF1058_RS17090 at 522.261 kb on + strand, within HMPREF1058_RS17090 at 522.261 kb on + strand, within HMPREF1058_RS17090 at 522.261 kb on + strand, within HMPREF1058_RS17090 at 522.261 kb on + strand, within HMPREF1058_RS17090 at 522.262 kb on - strand, within HMPREF1058_RS17090 at 522.262 kb on - strand, within HMPREF1058_RS17090 at 522.263 kb on + strand, within HMPREF1058_RS17090 at 522.305 kb on + strand, within HMPREF1058_RS17090 at 522.305 kb on + strand, within HMPREF1058_RS17090 at 522.306 kb on - strand, within HMPREF1058_RS17090 at 522.306 kb on - strand, within HMPREF1058_RS17090 at 522.319 kb on - strand, within HMPREF1058_RS17090 at 522.375 kb on - strand, within HMPREF1058_RS17090 at 522.416 kb on + strand, within HMPREF1058_RS17090 at 522.444 kb on + strand, within HMPREF1058_RS17090 at 522.444 kb on + strand, within HMPREF1058_RS17090 at 522.499 kb on + strand, within HMPREF1058_RS17090 at 522.499 kb on + strand, within HMPREF1058_RS17090 at 522.499 kb on + strand, within HMPREF1058_RS17090 at 522.500 kb on - strand, within HMPREF1058_RS17090 at 522.512 kb on + strand, within HMPREF1058_RS17090 at 522.516 kb on + strand, within HMPREF1058_RS17090 at 522.517 kb on - strand, within HMPREF1058_RS17090 at 522.623 kb on - strand at 522.668 kb on - strand at 522.669 kb on + strand at 522.681 kb on + strand at 522.721 kb on - strand at 523.460 kb on - strand, within HMPREF1058_RS17080 at 523.508 kb on - strand, within HMPREF1058_RS17080 at 523.861 kb on - strand, within HMPREF1058_RS17080 at 523.966 kb on - strand, within HMPREF1058_RS17080 at 524.492 kb on - strand at 524.495 kb on - strand at 524.495 kb on - strand at 524.556 kb on + strand at 524.557 kb on - strand at 524.580 kb on + strand at 524.646 kb on - strand at 524.646 kb on - strand at 524.708 kb on + strand at 524.709 kb on - strand at 524.714 kb on - strand at 524.753 kb on + strand at 524.842 kb on - strand, within HMPREF1058_RS17075 at 524.900 kb on + strand, within HMPREF1058_RS17075 at 524.957 kb on + strand, within HMPREF1058_RS17075 at 524.981 kb on - strand, within HMPREF1058_RS17075 at 524.991 kb on + strand, within HMPREF1058_RS17075 at 524.991 kb on + strand, within HMPREF1058_RS17075 at 524.991 kb on + strand, within HMPREF1058_RS17075 at 524.992 kb on - strand, within HMPREF1058_RS17075 at 524.992 kb on - strand, within HMPREF1058_RS17075 at 524.996 kb on + strand, within HMPREF1058_RS17075 at 524.997 kb on - strand, within HMPREF1058_RS17075 at 525.005 kb on - strand, within HMPREF1058_RS17075 at 525.056 kb on + strand, within HMPREF1058_RS17075 at 525.057 kb on - strand, within HMPREF1058_RS17075 at 525.103 kb on - strand, within HMPREF1058_RS17075 at 525.197 kb on + strand, within HMPREF1058_RS17075 at 525.269 kb on + strand, within HMPREF1058_RS17075 at 525.270 kb on - strand, within HMPREF1058_RS17075 at 525.290 kb on + strand, within HMPREF1058_RS17075 at 525.337 kb on + strand, within HMPREF1058_RS17075 at 525.344 kb on - strand, within HMPREF1058_RS17075 at 525.386 kb on + strand, within HMPREF1058_RS17075 at 525.439 kb on + strand, within HMPREF1058_RS17075 at 525.440 kb on - strand, within HMPREF1058_RS17075 at 525.440 kb on - strand, within HMPREF1058_RS17075
Per-strain Table
Position Strand Gene LocusTag Fraction pectate 2.5 mg/ml (C) remove 522,234 + HMPREF1058_RS17090 0.40 +0.5 522,261 + HMPREF1058_RS17090 0.43 -0.5 522,261 + HMPREF1058_RS17090 0.43 +0.3 522,261 + HMPREF1058_RS17090 0.43 +0.7 522,261 + HMPREF1058_RS17090 0.43 +1.0 522,262 - HMPREF1058_RS17090 0.44 +0.3 522,262 - HMPREF1058_RS17090 0.44 -0.4 522,263 + HMPREF1058_RS17090 0.44 -0.6 522,305 + HMPREF1058_RS17090 0.49 -1.5 522,305 + HMPREF1058_RS17090 0.49 +1.2 522,306 - HMPREF1058_RS17090 0.49 -0.3 522,306 - HMPREF1058_RS17090 0.49 +1.5 522,319 - HMPREF1058_RS17090 0.51 -1.4 522,375 - HMPREF1058_RS17090 0.59 -0.3 522,416 + HMPREF1058_RS17090 0.64 +0.5 522,444 + HMPREF1058_RS17090 0.68 +4.0 522,444 + HMPREF1058_RS17090 0.68 +0.1 522,499 + HMPREF1058_RS17090 0.75 +0.6 522,499 + HMPREF1058_RS17090 0.75 -0.1 522,499 + HMPREF1058_RS17090 0.75 -2.1 522,500 - HMPREF1058_RS17090 0.75 -0.4 522,512 + HMPREF1058_RS17090 0.77 -0.2 522,516 + HMPREF1058_RS17090 0.77 -1.4 522,517 - HMPREF1058_RS17090 0.77 +0.9 522,623 - -1.2 522,668 - -0.2 522,669 + +0.3 522,681 + -0.5 522,721 - -1.0 523,460 - HMPREF1058_RS17080 0.19 +0.2 523,508 - HMPREF1058_RS17080 0.23 -1.9 523,861 - HMPREF1058_RS17080 0.51 -0.0 523,966 - HMPREF1058_RS17080 0.59 -0.0 524,492 - +0.2 524,495 - -0.6 524,495 - +0.2 524,556 + +0.8 524,557 - -0.9 524,580 + -0.7 524,646 - +0.5 524,646 - +2.4 524,708 + +0.9 524,709 - +0.3 524,714 - +1.2 524,753 + +1.0 524,842 - HMPREF1058_RS17075 0.15 +1.6 524,900 + HMPREF1058_RS17075 0.19 +0.7 524,957 + HMPREF1058_RS17075 0.24 -0.3 524,981 - HMPREF1058_RS17075 0.25 +0.1 524,991 + HMPREF1058_RS17075 0.26 -1.9 524,991 + HMPREF1058_RS17075 0.26 +0.1 524,991 + HMPREF1058_RS17075 0.26 -0.9 524,992 - HMPREF1058_RS17075 0.26 -1.4 524,992 - HMPREF1058_RS17075 0.26 +1.6 524,996 + HMPREF1058_RS17075 0.27 +0.1 524,997 - HMPREF1058_RS17075 0.27 +1.1 525,005 - HMPREF1058_RS17075 0.27 +0.4 525,056 + HMPREF1058_RS17075 0.31 +0.2 525,057 - HMPREF1058_RS17075 0.31 +1.0 525,103 - HMPREF1058_RS17075 0.35 +0.4 525,197 + HMPREF1058_RS17075 0.42 +0.8 525,269 + HMPREF1058_RS17075 0.47 +0.5 525,270 - HMPREF1058_RS17075 0.47 -0.6 525,290 + HMPREF1058_RS17075 0.49 -0.6 525,337 + HMPREF1058_RS17075 0.53 -0.8 525,344 - HMPREF1058_RS17075 0.53 +0.3 525,386 + HMPREF1058_RS17075 0.56 -0.4 525,439 + HMPREF1058_RS17075 0.60 +0.1 525,440 - HMPREF1058_RS17075 0.60 +0.0 525,440 - HMPREF1058_RS17075 0.60 +1.4
Or see this region's nucleotide sequence